Pairwise Alignments

Query, 513 a.a., transcriptional regulator TyrR from Vibrio cholerae E7946 ATCC 55056

Subject, 479 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

 Score =  201 bits (510), Expect = 6e-56
 Identities = 125/339 (36%), Positives = 185/339 (54%), Gaps = 47/339 (13%)

Query: 215 LMSQAKKLAMLDQPLLIEGETGTGKEMLAKACHNRSDRSSAPFLVLSCASMPDDVAETEL 274
           L++ A K+A  D  ++I G +G+GKE++++  HN S R   PF+ ++CA++PD++ E  L
Sbjct: 141 LLALADKVAKTDANVMILGPSGSGKEVMSRYIHNASPRKEGPFIAINCAAIPDNMLEATL 200

Query: 275 FGHAPGSFNHQ-QGHKGIFEQANGGTVFLDEIGEMSPHLQIKLLRFLQDGTFRRVGEEHE 333
           FG+  G+F    Q   G FEQA GGT+ LDEI EM  +LQ KLLR LQ+    R+G    
Sbjct: 201 FGYEKGAFTGAVQACPGKFEQAQGGTILLDEISEMDLNLQAKLLRVLQEREVERLGSRKS 260

Query: 334 IHVDVRVIASTRHNLADLAESRRFREDLFYRLNVLTLRIPPLRERPSDVQPLLELFITKH 393
           I +DVRV+A++  +L    ++  FREDL+YRLNV  L  P L ER  D++PL    I +H
Sbjct: 261 IKLDVRVLATSNRDLKQYVQAGHFREDLYYRLNVFPLTWPALCERKDDIEPLANHLIERH 320

Query: 394 CNKLGMLKPKLTDDLLDKLSQYQWPGNMRQLDNMVLRAL--------------------- 432
           C KLG+  P +  + + KL  Y WPGN+R+LDN+V RAL                     
Sbjct: 321 CKKLGLPVPSIAPNAITKLLNYPWPGNVRELDNVVQRALILSENGHIQSEHILLEGVDWH 380

Query: 433 --TEIEGDVLGIEPFHLPQVDSV----------------SSAPSINLDGSLDDIMKEYES 474
             + ++  V G E    PQ+  V                SS+ S  L G L D  +E+ +
Sbjct: 381 DASSLQQAVAG-ESMAAPQIKPVAEPEVFKPLVQGGGQNSSSQSSGLGGELRD--QEF-A 436

Query: 475 QVLDRLFQSFPSSRKLAKRLNVSHTSIANKL---RDYGI 510
            +LD L +     +++A++L +S  ++  KL   RD GI
Sbjct: 437 IILDTLAECQGRRKEMAEKLGISPRTLRYKLAKMRDAGI 475