Pairwise Alignments

Query, 513 a.a., transcriptional regulator TyrR from Vibrio cholerae E7946 ATCC 55056

Subject, 519 a.a., sigma-54 dependent transcriptional regulator from Pseudomonas putida KT2440

 Score =  379 bits (972), Expect = e-109
 Identities = 208/517 (40%), Positives = 317/517 (61%), Gaps = 6/517 (1%)

Query: 1   MRLEVLCEDRLGLTRELLDILASKSIDLRGIEI--DVIGIIYLNCPDIDFETFSELMAEI 58
           MR++V C++R+G+ R++L++L    I++   E+  D    IYL+CP++    F  L  + 
Sbjct: 1   MRIKVHCQNRIGILRDILNLLVEYGINVLRGEVGGDHGNAIYLHCPNLINLQFQALRPKF 60

Query: 59  RRIPGVKDVRKIQFMPIERHNTELISLLNNLPDAVLAINLKGAVDMANHAAAALFNREES 118
             I GV  V+++  MP ER + EL +LL  L   VL+I++ G++  AN AAA L      
Sbjct: 61  EAIAGVFGVKRVGLMPSERRHMELNALLGALDFPVLSIDMGGSIVAANRAAAQLLGVRVD 120

Query: 119 SMIGQQISALMPVFNFTRWLEGSKSRLRE-DVVLDGLDYVMEIMPVYISSDAKQSTLASA 177
            + G  ++  +  F+    +  +KSR+    + + G  ++ +I P+    D  ++ LA A
Sbjct: 121 EVPGMPLARYVEDFDLPELVRANKSRINGLRIKVKGDVFLADIAPLQSEHDDSEA-LAGA 179

Query: 178 MMMLRAANAGLTSTTQIPLQSNLGFEHFVGVSNRHKSLMSQAKKLAMLDQPLLIEGETGT 237
           ++ L  A+        +  Q   GF+     S    +++ +A+++A LD PLLIEGETGT
Sbjct: 180 VLTLHRADRIGERIYNVRKQELRGFDSIFQSSRVMAAVVREARRMAPLDAPLLIEGETGT 239

Query: 238 GKEMLAKACHNRSDRSSAPFLVLSCASMPDDVAETELFGHAPGSFN--HQQGHKGIFEQA 295
           GKE+LA+ACH  S R  +P + L+CA +P+ +AETELFG+ PG+F     +G  G+ E  
Sbjct: 240 GKELLARACHLASPRGQSPLMALNCAGLPESMAETELFGYGPGAFEGARAEGKLGLLELT 299

Query: 296 NGGTVFLDEIGEMSPHLQIKLLRFLQDGTFRRVGEEHEIHVDVRVIASTRHNLADLAESR 355
            GGT+FLD +GEMSP LQ+KLLRFLQDG FRRVG + E+++DVRVI +T+ +L++L    
Sbjct: 300 AGGTLFLDGVGEMSPRLQVKLLRFLQDGCFRRVGSDEEVYLDVRVICATQVDLSELCARG 359

Query: 356 RFREDLFYRLNVLTLRIPPLRERPSDVQPLLELFITKHCNKLGMLKPKLTDDLLDKLSQY 415
            FR+DL++RLNVL+L IPPLRE    ++ L++ F+ +   ++G   P+L    +DKL QY
Sbjct: 360 EFRQDLYHRLNVLSLHIPPLRECMDGLEGLVQHFLDQASRQIGCAMPRLAPAAMDKLGQY 419

Query: 416 QWPGNMRQLDNMVLRALTEIEGDVLGIEPFHLPQVDSVSSAPSINLDGSLDDIMKEYESQ 475
            WPGN+RQL+N++ +A++  +G V+  E   LP           +L+G L  I+  +E  
Sbjct: 420 HWPGNVRQLENVLFQAVSLCDGGVVKSEHIRLPDYGVRQPLGEFSLEGDLSQIVGRFEKA 479

Query: 476 VLDRLFQSFPSSRKLAKRLNVSHTSIANKLRDYGIRK 512
           VL+ L   FPSSR L KRL VSHT+IANKLRDY + K
Sbjct: 480 VLESLMGEFPSSRALGKRLGVSHTTIANKLRDYSLNK 516