Pairwise Alignments

Query, 513 a.a., transcriptional regulator TyrR from Vibrio cholerae E7946 ATCC 55056

Subject, 652 a.a., sigma 54-interacting transcriptional regulator from Serratia liquefaciens MT49

 Score =  207 bits (528), Expect = 7e-58
 Identities = 115/317 (36%), Positives = 190/317 (59%), Gaps = 18/317 (5%)

Query: 202 FEHFVGVSNRHKSLMSQAKKLAMLDQPLLIEGETGTGKEMLAKACHNRSDRSSAPFLVLS 261
           FE   G S+R +  + QA+  +  D  +L+ GE+GTGKE+ A+A HN  +R + PF+ ++
Sbjct: 339 FEMIFGHSSRMREAIMQARTCSRSDSTVLLTGESGTGKELFAQAIHNGGERCNEPFVAVN 398

Query: 262 CASMPDDVAETELFGHAPGSF--NHQQGHKGIFEQANGGTVFLDEIGEMSPHLQIKLLRF 319
           C ++P D+ ++ELFG+  G+F  + + G  G FE A+GGT+ LDEIGEM    Q  LLR 
Sbjct: 399 CGALPRDLVQSELFGYVDGAFTGSRRGGSAGKFELADGGTLLLDEIGEMPLDAQTSLLRV 458

Query: 320 LQDGTFRRVGEEHEIHVDVRVIASTRHNLADLAESRRFREDLFYRLNVLTLRIPPLRERP 379
           LQ+G   R+G  H + V+VR+IA+T  +L    E+  FR DL+YRLNVL+L +PPLRER 
Sbjct: 459 LQEGEVLRIGAAHPVKVNVRIIAATHCDLLQAVENGAFRRDLYYRLNVLSLPVPPLRERR 518

Query: 380 SDVQPLLELFITKHCNKLGMLKPKLTDDLLDKLSQYQWPGNMRQLDNMVLRALTEIEGDV 439
            D+  L+  FI K   ++  + P+++   +  L+ + WPGN+R+L+N+V R +   EG +
Sbjct: 519 EDIAGLVNGFIHKLSTRMKKIPPQVSPQAMVCLNAWHWPGNVRELENLVERMVNLCEGLL 578

Query: 440 LGIEPF------HLPQVDSVSSAPSINLDGSLDDIMKEYESQVLDRLFQSFPSSRKLAKR 493
           + ++          P+ ++V S+        L+D  + +  Q+++    S  + R+ A+ 
Sbjct: 579 IDVDDLPREIAQAFPEQEAVPSS-------RLEDNERAHIIQIIE---SSNGNLRQAARL 628

Query: 494 LNVSHTSIANKLRDYGI 510
           L +S T++ NK+  + I
Sbjct: 629 LGLSRTTLYNKINRWQI 645



 Score = 26.2 bits (56), Expect = 0.004
 Identities = 11/36 (30%), Positives = 22/36 (61%)

Query: 71  QFMPIERHNTELISLLNNLPDAVLAINLKGAVDMAN 106
           Q + I  HN ELI++  ++ + +LA N  G +++ +
Sbjct: 79  QLLAILAHNAELIAVARSIMENLLAYNPDGHINLTD 114