Pairwise Alignments

Query, 417 a.a., serine transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 423 a.a., predicted transporter (NCBI) from Escherichia coli BW25113

 Score =  145 bits (366), Expect = 2e-39
 Identities = 110/391 (28%), Positives = 178/391 (45%), Gaps = 21/391 (5%)

Query: 17  WTYKDFTWALSLFGTAVGAGVLFLPIKAGAGGFWPLVLLALIAAPMTWFAHKSLARFVLS 76
           +T  DF W L   G A+GAG + +P++ G  G W  +  A+IA P TW       +  LS
Sbjct: 15  FTRYDFGWVLLCIGMAIGAGTVLMPVQIGLKGIWVFITAAIIAYPATWVVQDIYLK-TLS 73

Query: 77  AKNPDADITDTVEEHFGKAGANLITFAYFFAIYPIVLIYGVGITNTVDSFLVNQIGMES- 135
             +   D TD +  + GK     +   YF  I   + IY + +     S+L    G+   
Sbjct: 74  ESDSCNDYTDIISHYLGKNWGIFLGVIYFLMIIHGIFIYSLSVVFDSASYL-KTFGLTDA 132

Query: 136 -IPRWLLSGALITAMTAGVVFGKE-LMLKATSAMVYPLVFILLALSFYLIPDWNTSMMEV 193
            + + LL    I A+   +  G E L+ K +  MV   V I++   F +IP WN + +  
Sbjct: 133 DLSQSLLYKVAIFAVLVAIASGGERLLFKISGPMVVVKVGIIVVFGFAMIPHWNFANITA 192

Query: 194 APDWSAMPAIVWLAIPIIVFSFNHSPIISQFSKEQRQQFGDKAVQ-----KTDMITGGAA 248
            P  S     V L IP   FS     +++  +   R++  DK +      +T  I+    
Sbjct: 193 FPQASVFFRDVLLTIPFCFFSAVFIQVLNPMNIAYRKREADKVLATRLALRTHRIS---Y 249

Query: 249 MMLMGFVMFFVFSVVLSLSPAELAMAKEQNISVLSYLANEHASPIISYLGPIVAFAAITS 308
           + L+  ++FF FS   S+S  E   A EQNIS L+  A      II     ++   A+ +
Sbjct: 250 ITLIAVILFFAFSFTFSISHEEAVSAFEQNISALALAAQVIPGHIIHITSTVLNIFAVLT 309

Query: 309 SYFGHFLGAHEGLVGLVKSRSN--MQVSKIEKISL-----GFIVITTWIVAIVNPSILGM 361
           ++FG +LG HE + G++ +  +  +   KI    L      FIVIT  I      S+L  
Sbjct: 310 AFFGIYLGFHEAIKGIILNLLSRIIDTKKINSRVLTLAICAFIVITLTIWVSFRVSVLVF 369

Query: 362 IETMGAPMIAAILFLLPVFAMHKVPAMAKFK 392
            + +G+P+   +  L+P F ++KV  + K +
Sbjct: 370 FQ-LGSPLYGIVSCLIPFFLIYKVAQLEKLR 399