Pairwise Alignments

Query, 417 a.a., serine transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 409 a.a., predicted transporter (NCBI) from Escherichia coli BW25113

 Score =  246 bits (629), Expect = 7e-70
 Identities = 134/408 (32%), Positives = 243/408 (59%), Gaps = 14/408 (3%)

Query: 17  WTYKDFTWALSLFGTAVGAGVLFLPIKAGAGGFWPLVLLALIAAPMTWFAHKSLARFVLS 76
           W+ ++  W+ +L+GTAVGAG LFLPI+ G+ G   L + AL+A P+T++ HK+L +F+LS
Sbjct: 5   WSKEETLWSFALYGTAVGAGTLFLPIQLGSAGAVVLFITALVAWPLTYWPHKALCQFILS 64

Query: 77  AKNPDAD-ITDTVEEHFGKAGANLITFAYFFAIYPIVLIYGVGITNTVDSFLVNQIGMES 135
           +K    + IT  V  ++GK   NLIT  YF A + +VLIY V ITN++   L   + ++ 
Sbjct: 65  SKTSAGEGITGAVTHYYGKKIGNLITTLYFIAFFVVVLIYAVAITNSLTEQLAKHMVIDL 124

Query: 136 IPRWLLSGALITAMTAGVVFGKELMLKATSAMVYPLVFILLALSFYLIPDWNTSMMEVAP 195
             R L+S  ++  +    + G+   ++    +V+PL+   L LS YL+  W   ++    
Sbjct: 125 RIRMLVSLGVVLILNLIFLMGRHATIRVMGFLVFPLIAYFLFLSIYLVGSWQPDLLTTQV 184

Query: 196 DWSAMPAI-VWLAIPIIVFSFNHSPIISQFSKEQRQQFGDKAVQKTDMITGGAAMMLMGF 254
           +++      +W++IP++VF+F+H+PIIS F+ ++R+++G+ A+ K   I   A +++   
Sbjct: 185 EFNQNTLHQIWISIPVMVFAFSHTPIISTFAIDRREKYGEHAMDKCKKIMKVAYLIICIS 244

Query: 255 VMFFVFSVVLSLSPAELAMAKEQNISVLSYLANEHASPI-ISYLGPIVAFAAITSSYFGH 313
           V+FFVFS +LS+ P+ +  AKE+ +++LS L+    +P  +S  G IVA  A++ S+ G 
Sbjct: 245 VLFFVFSCLLSIPPSYIEAAKEEGVTILSALSMLPNAPAWLSISGIIVAVVAMSKSFLGT 304

Query: 314 FLGAHEGLVGLVKSRSNMQVSKIEK-------ISLGFIVITTWIVAIVNPSILGMIETMG 366
           + G  EG   +VK  + +Q   ++K       +S+  + + T+IV  +NP+ + MI  + 
Sbjct: 305 YFGVIEGATEVVK--TTLQQVGVKKSRAFNRALSIMLVSLITFIVCCINPNAISMIYAIS 362

Query: 367 APMIAAILFLLPVFAMHKVPAMAKFKTSAPVQIFTVICGLAAISSVIY 414
            P+IA ILF++P  + + +PA+  +++     + T+I G+  +S + +
Sbjct: 363 GPLIAMILFIMPTLSTYLIPALKPWRSIG--NLITLIVGILCVSVMFF 408