Pairwise Alignments

Query, 543 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 644 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  160 bits (406), Expect = 1e-43
 Identities = 115/356 (32%), Positives = 187/356 (52%), Gaps = 15/356 (4%)

Query: 180 LIGVGIMSVIALFGFMLTLFFMRRIIVLPLQKTSAFMCEVSKSK-DLSHRLENDRKDELG 238
           L+G+G++ +IA+         + R +V  L+   A M +++  + DL+ R++   KDE+G
Sbjct: 298 LVGLGVLLLIAIV--------LGRRVVNRLKLLIAAMDDLAAGEGDLTKRVQISSKDEIG 349

Query: 239 QLAVSINSLMDTVSDSLQQVQDTSHSLADSAKKLTNVAQVTDQAANNQQKETAEVQTNIT 298
            +A ++N  +D +   +++  D +         +T      D AA  Q+ E AE    ++
Sbjct: 350 DMASAVNRFVDKLQPIVREAGDVAQRTGVEIGAMTLRNAGADAAAGLQRDEVAESLRALS 409

Query: 299 DMQGKQQQVEFATEEASKLVNHTTSIVQQSAKQAHAASEDIKNLVGDIEAVKQRIVELNN 358
            M  + Q    A + A + V        ++++ +      I+ L G ++A  Q I  L  
Sbjct: 410 QMADEAQAESHAMQAALQQVVDIRQATDENSRTSAEVGSLIEALAGQVQAGSQVIERLAQ 469

Query: 359 QTGQVSSILGVIKGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRHLASRTTEATGN 418
           Q+ Q+  +L VI GIAEQTNLLALNAAIEAARAGE GRGFAVVADEVR LAS+T  +TG+
Sbjct: 470 QSEQIEVVLTVIHGIAEQTNLLALNAAIEAARAGETGRGFAVVADEVRALASKTQSSTGD 529

Query: 419 IENIIAGFQRDSQASLSSVDTVCSHAHQRSSEVEEL--SAAMTRVVSEMQQVLSHAMGIQ 476
           I+  I   Q   Q +  +VDT+     Q S  +  L  S  + + V    + +  A+G+ 
Sbjct: 530 IQAHIVALQ---QGAREAVDTIGKAGRQASEGLLVLRDSVRLQQTVQASVEQVHAAIGLA 586

Query: 477 EQ-TKRTTEVSHEIQNKVDVITHHANNTSQSASETREISIDLEHLSQQLESLLNQF 531
            +  +   + +H ++ +V+VI   A   +Q+  ET      L+ L+ QL++ L QF
Sbjct: 587 TRAAEHQAQGAHAVRGRVEVIHAQAERAAQAVQETTASGKVLDGLAAQLKASLGQF 642