Pairwise Alignments

Query, 543 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 645 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  162 bits (410), Expect = 4e-44
 Identities = 108/374 (28%), Positives = 188/374 (50%), Gaps = 6/374 (1%)

Query: 159 LGVIRLEFNLNHLTQMVNHRTLIGVGIMSVIALFGFMLTLFFMRRIIVLPLQKTSAFMCE 218
           +G+I     +   T+M     LI VG++  + +FG +   F   ++IV P+ + S  +  
Sbjct: 275 IGLIEHREVMAEATRMTYLTALI-VGVL--VLIFGLIAAAF--SKVIVKPIGQVSTGLQS 329

Query: 219 VSKSK-DLSHRLENDRKDELGQLAVSINSLMDTVSDSLQQVQDTSHSLADSAKKLTNVAQ 277
           +++ + DL H L+   KDE  +LA   N  +  +   +Q +   S +L +++K  + VA 
Sbjct: 330 IAQGEGDLRHELQVQGKDETAELAGWFNKFLAAIRQLIQHIGAASANLQNASKVNSEVAH 389

Query: 278 VTDQAANNQQKETAEVQTNITDMQGKQQQVEFATEEASKLVNHTTSIVQQSAKQAHAASE 337
             ++AA  Q++    V T   +M     +V  +   A++   +    V +  +Q    ++
Sbjct: 390 NMNEAAGRQREAVELVSTAFNEMVATANEVARSCSGAAESAENGHRRVAEGKQQIEVTTD 449

Query: 338 DIKNLVGDIEAVKQRIVELNNQTGQVSSILGVIKGIAEQTNLLALNAAIEAARAGEQGRG 397
           ++  L   +    Q +VEL   +  ++ ILG I+ IAEQTNLLALNAAIEAARAG+QGRG
Sbjct: 450 NVNRLGRRLTESSQAMVELEAGSRSINQILGTIRAIAEQTNLLALNAAIEAARAGDQGRG 509

Query: 398 FAVVADEVRHLASRTTEATGNIENIIAGFQRDSQASLSSVDTVCSHAHQRSSEVEELSAA 457
           FAVVADEVR LA RT+++TG IE ++   +  +Q     + +    +    S +E    +
Sbjct: 510 FAVVADEVRALAKRTSDSTGEIEQLLGTLENKTQEVTQKMGSCLDLSRASVSSIESARDS 569

Query: 458 MTRVVSEMQQVLSHAMGIQEQTKRTTEVSHEIQNKVDVITHHANNTSQSASETREISIDL 517
              + + + ++    + I    +    V+ EI   +  I   A      A+  ++ S  L
Sbjct: 570 FEGIQTSVNEIRDQNLQISAAAEEQHSVAEEINRHIQQIYDEARLVESLANSAQDDSGRL 629

Query: 518 EHLSQQLESLLNQF 531
            +LS +L  L+ +F
Sbjct: 630 SNLSDELNGLVGRF 643



 Score = 30.8 bits (68), Expect = 2e-04
 Identities = 22/133 (16%), Positives = 55/133 (41%), Gaps = 7/133 (5%)

Query: 240 LAVSINSLMDTVSDSLQQVQDTSHSLADSAKKLT-------NVAQVTDQAANNQQKETAE 292
           +A  + +L    SDS  +++    +L +  +++T       ++++ +  +  + +     
Sbjct: 513 VADEVRALAKRTSDSTGEIEQLLGTLENKTQEVTQKMGSCLDLSRASVSSIESARDSFEG 572

Query: 293 VQTNITDMQGKQQQVEFATEEASKLVNHTTSIVQQSAKQAHAASEDIKNLVGDIEAVKQR 352
           +QT++ +++ +  Q+  A EE   +       +QQ   +A        +   D   +   
Sbjct: 573 IQTSVNEIRDQNLQISAAAEEQHSVAEEINRHIQQIYDEARLVESLANSAQDDSGRLSNL 632

Query: 353 IVELNNQTGQVSS 365
             ELN   G+  S
Sbjct: 633 SDELNGLVGRFKS 645