Pairwise Alignments

Query, 543 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 540 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  160 bits (406), Expect = 9e-44
 Identities = 103/370 (27%), Positives = 190/370 (51%), Gaps = 12/370 (3%)

Query: 165 EFNLNHLTQMVNHRTLIGVGIMSVIALF-GFMLTLFFMRRIIVLPLQKTSAFMCEVSKSK 223
           E   + LT M++     G+ +  +IA+  G ++T     R+I  P+ +       +++  
Sbjct: 182 ELRNSALTWMIS-----GIVLAFLIAIIIGVLIT-----RLITRPIAQAVQSAQRIAQG- 230

Query: 224 DLSHRLENDRKDELGQLAVSINSLMDTVSDSLQQVQDTSHSLADSAKKLTNVAQVTDQAA 283
           DL+  +  +R DE GQL ++++ +   +  +L ++ + S  LA +A++L+ V   + +  
Sbjct: 231 DLTQAIITERTDEAGQLLMALSDMQGGLKSTLVEIANASDQLASAAEELSAVTDESSRGL 290

Query: 284 NNQQKETAEVQTNITDMQGKQQQVEFATEEASKLVNHTTSIVQQSAKQAHAASEDIKNLV 343
             Q  E  +  T +  M     +V       S+     T+  +   +Q   A   + ++V
Sbjct: 291 TRQNDEIQQAATAVNQMTAAVDEVASNAVSTSEASRQATTEAEDGRQQVEQAVSGMSSMV 350

Query: 344 GDIEAVKQRIVELNNQTGQVSSILGVIKGIAEQTNLLALNAAIEAARAGEQGRGFAVVAD 403
            +I    Q + +L  Q  ++  ++ VI+GIA+QTNLLALNAAIEAARAGEQGRGFAVVAD
Sbjct: 351 VEINDSTQSVADLAGQVREIGKVIDVIRGIADQTNLLALNAAIEAARAGEQGRGFAVVAD 410

Query: 404 EVRHLASRTTEATGNIENIIAGFQRDSQASLSSVDTVCSHAHQRSSEVEELSAAMTRVVS 463
           EVR LA RT  +T +IE +I   Q  +  ++++++   + A+   +  +    A+ R+ +
Sbjct: 411 EVRALAHRTQISTVDIEKMIGDVQTGADDAVAAMNKSLTWANNTQTLAQNAGEALQRITA 470

Query: 464 EMQQVLSHAMGIQEQTKRTTEVSHEIQNKVDVITHHANNTSQSASETREISIDLEHLSQQ 523
            + ++    + I   ++   +V+ E+   +  I   +  T+  A +T   S DL  L+  
Sbjct: 471 SVAKINERNLVIASASEEQAQVAREVDRNLLNIQDLSTQTAAGAHQTNASSQDLSRLATS 530

Query: 524 LESLLNQFTL 533
              L+++F L
Sbjct: 531 FNVLVSKFQL 540