Pairwise Alignments

Query, 543 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 543 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  179 bits (455), Expect = 2e-49
 Identities = 116/383 (30%), Positives = 212/383 (55%), Gaps = 16/383 (4%)

Query: 159 LGVIRLEFNLNHLTQMVNHRTLIGVGIMSVIALFGFMLTL-FFMRRIIVLPLQKTSAFMC 217
           L +  ++ N + LT+++++ +   V   S++AL  FM  + + +  +I  PL +      
Sbjct: 169 LNLSYVDNNRSELTELIDNISEFSVA--SIVALLAFMSAVTWLLTNLICSPLMQVVTQAN 226

Query: 218 EVSKSKDLSHRLENDRK----DELGQLAVSINSLMDTVSDSLQQVQDTSHSLADSAKKLT 273
            +++  +L+HRL  DRK    DELG+LA + + + + +   ++++  ++  LA +  +++
Sbjct: 227 AIAEG-NLAHRL--DRKTIGHDELGELADACSKMQNNLRLMVEEIITSATQLAHAVDEVS 283

Query: 274 NVAQVTDQAANNQQKETAEVQTNITDMQGKQQQVEFATEEASKLVNHTTSIVQQSAKQAH 333
            V++ T Q    QQ+E  ++ T + +M+    +V   TE AS     ++      ++Q  
Sbjct: 284 AVSEQTSQGMQIQQEEVMQIATAMAEMKSTVAEVARNTEVASDASRDSSQHANVGSQQMR 343

Query: 334 AASEDIKNLVGDIEAVKQRIVELNNQTGQVSSILGVIKGIAEQTNLLALNAAIEAARAGE 393
           A ++ I+++  +I   +QR++EL +Q  Q++ ++ VI  IAEQTNLLALNAAIEAARAGE
Sbjct: 344 AVNDSIQHVNQEIGRTEQRVLELESQAQQINMVVDVISNIAEQTNLLALNAAIEAARAGE 403

Query: 394 QGRGFAVVADEVRHLASRTTEATGNIENIIAGFQRDSQASLSSVDT---VCSHAHQRSSE 450
           QGRGFAVVADEVR LA +T ++TG+I  II   Q  +Q +  + +    + +H  ++S E
Sbjct: 404 QGRGFAVVADEVRSLAGKTQQSTGDIVEIIQNLQACAQKARETTNNSRELINHCVEQSQE 463

Query: 451 VEELSAAMTRVVSEMQQVLSHAMGIQEQTKRTTEVSHEIQNKVDVITHHANNTSQSASET 510
            ++   A+ ++  +  Q+    + I         VS E+   ++ I   A   +Q +S  
Sbjct: 464 TQQ---AIEQIRHQSSQIADMTIQIASACGEQDSVSEELSRNIERINESAKQVAQGSSSA 520

Query: 511 REISIDLEHLSQQLESLLNQFTL 533
            +   +L  L+ QL+  + +F L
Sbjct: 521 AQSCAELSQLASQLQDTVQRFRL 543



 Score = 30.0 bits (66), Expect = 2e-04
 Identities = 22/112 (19%), Positives = 48/112 (42%), Gaps = 14/112 (12%)

Query: 437 VDTVCSHAHQRSSEVEELSAAMTRVVSEMQ----QVLSHAMGIQEQTKRTTEVSHEIQNK 492
           V+ + + A Q +  V+E+SA   +    MQ    +V+  A  + E      EV+   +  
Sbjct: 265 VEEIITSATQLAHAVDEVSAVSEQTSQGMQIQQEEVMQIATAMAEMKSTVAEVARNTEVA 324

Query: 493 VDVITHHANNTSQSASETREISIDLEHLSQQ----------LESLLNQFTLI 534
            D     + + +  + + R ++  ++H++Q+          LES   Q  ++
Sbjct: 325 SDASRDSSQHANVGSQQMRAVNDSIQHVNQEIGRTEQRVLELESQAQQINMV 376