Pairwise Alignments

Query, 543 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 548 a.a., methyl-accepting chemotaxis protein HlyB from Vibrio cholerae E7946 ATCC 55056

 Score =  167 bits (422), Expect = 1e-45
 Identities = 114/354 (32%), Positives = 177/354 (50%), Gaps = 13/354 (3%)

Query: 188 VIALFGFMLTLFFMRRIIVLPLQKTSAF----MCEVSKSKDLSHRLENDRKDELGQLAVS 243
           VI   G +++ F    +I+  L+   A+    M   + +  L  RLE D  DEL  +  S
Sbjct: 200 VIIAAGLIIS-FITSLVIITNLRSRVAYLKDRMSSAAANLSLRTRLELDGNDELCDIGKS 258

Query: 244 INSLMDTVSDSLQQVQDTSHSLADSAKKLTNVAQVTDQAANNQQKETAEVQTNITDMQGK 303
            N+ +D V  S+++V + S  LA  A  ++  A +T     +Q+  T +V T I ++   
Sbjct: 259 FNAFIDKVHHSIEEVAENSKELATMASSVSQRAHMTQSNCASQRDRTVQVATAIHELGAT 318

Query: 304 QQQVEFATEEASKLVNHTTSIVQQSAKQAHAASEDIKNLVGDIEAVKQRIVELNNQTGQV 363
             ++      A+ +    T    +  K        I+ LV +++   Q +  L  Q   +
Sbjct: 319 VSEIASNAAMAADVAKQATLHSGEGKKVVGEVQNRIQTLVNELDNATQVVSSLATQINGI 378

Query: 364 SSILGVIKGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRHLASRTTEATGNIENII 423
           SS L  I+ I+EQTNLLALNAAIEAARAGEQGRGFAVVADEVR LASR+  +T  I+ +I
Sbjct: 379 SSTLDTIRSISEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRSAASTEEIQQVI 438

Query: 424 AGFQRDSQASLSSVDTVCSHAHQRSSEVEELSA----AMTRVVSEMQQVLSHAMGIQEQT 479
              Q +S  ++ +++        +S  V E SA    ++T + S++ Q+    + +   T
Sbjct: 439 NRLQTESTRAVEAME----KGRSQSDVVVEFSAKANQSLTEINSQIDQINDQNIQVATAT 494

Query: 480 KRTTEVSHEIQNKVDVITHHANNTSQSASETREISIDLEHLSQQLESLLNQFTL 533
           +  + V  +I   V+ I      TS  A E    S  L+ LS QL+ L+  F L
Sbjct: 495 EEQSTVVEDINRNVEDINQLTTETSHVADELSRASASLQRLSSQLDKLVGSFEL 548



 Score = 41.6 bits (96), Expect = 8e-08
 Identities = 44/229 (19%), Positives = 92/229 (40%), Gaps = 15/229 (6%)

Query: 323 SIVQQSAKQAHAASEDI-----KNLV----GDIEAVKQRIVELNNQTGQVSSILGVIKGI 373
           +++QQ+ +Q HA+ E       K +V    G I +    +V + N   +V+ +   +   
Sbjct: 175 TLLQQAEQQNHASVESFEAGRTKQMVIIAAGLIISFITSLVIITNLRSRVAYLKDRMSSA 234

Query: 374 AEQTNL---LALNAAIEAARAGEQGRGFAVVADEVRHLASRTTEATGNIENIIAGFQRDS 430
           A   +L   L L+   E     + G+ F    D+V H      E +  +  + +   + +
Sbjct: 235 AANLSLRTRLELDGNDELC---DIGKSFNAFIDKVHHSIEEVAENSKELATMASSVSQRA 291

Query: 431 QASLSSVDTVCSHAHQRSSEVEELSAAMTRVVSEMQQVLSHAMGIQEQTKRTTEVSHEIQ 490
             + S+  +      Q ++ + EL A ++ + S        A      +    +V  E+Q
Sbjct: 292 HMTQSNCASQRDRTVQVATAIHELGATVSEIASNAAMAADVAKQATLHSGEGKKVVGEVQ 351

Query: 491 NKVDVITHHANNTSQSASETREISIDLEHLSQQLESLLNQFTLIAKNSA 539
           N++  + +  +N +Q  S        +      + S+  Q  L+A N+A
Sbjct: 352 NRIQTLVNELDNATQVVSSLATQINGISSTLDTIRSISEQTNLLALNAA 400