Pairwise Alignments

Query, 543 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 644 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

 Score =  182 bits (462), Expect = 3e-50
 Identities = 113/349 (32%), Positives = 183/349 (52%), Gaps = 3/349 (0%)

Query: 186 MSVIALFGFMLTLFFMRRIIVLPLQKTSAFMCEVSKSK-DLSHRLENDRKDELGQLAVSI 244
           ++V A+F FM    F+   I +P+ + +    ++ +   DLS R+E    DE+ QL+   
Sbjct: 298 LAVAAIFIFMG--IFLANSIAMPINQIAKRFTDLGRGDGDLSQRIEVKGNDEIAQLSKGF 355

Query: 245 NSLMDTVSDSLQQVQDTSHSLADSAKKLTNVAQVTDQAANNQQKETAEVQTNITDMQGKQ 304
           N  ++ +  S++ V  TS  L  +A+ ++  A VT   +  Q+ +T +V T I  M    
Sbjct: 356 NGFIEKIHQSIKDVAQTSRELQVAAEGVSRKALVTHDNSQQQRDQTIQVVTAINQMGATI 415

Query: 305 QQVEFATEEASKLVNHTTSIVQQSAKQAHAASEDIKNLVGDIEAVKQRIVELNNQTGQVS 364
            ++      A++  N  +    Q     + A E I  L  DIE   + + +L + T ++ 
Sbjct: 416 SEIASNAATAAETANQASGNADQGRNVVNKAKEAISRLAHDIENTGKVVEQLASTTQEIG 475

Query: 365 SILGVIKGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRHLASRTTEATGNIENIIA 424
           SIL  I+GI+EQTNLLALNAAIEAARAG+QGRGFAVVADEVR+LASRT  +T  I+ +I 
Sbjct: 476 SILDAIRGISEQTNLLALNAAIEAARAGDQGRGFAVVADEVRNLASRTASSTEEIQKMIN 535

Query: 425 GFQRDSQASLSSVDTVCSHAHQRSSEVEELSAAMTRVVSEMQQVLSHAMGIQEQTKRTTE 484
             Q D++ ++S++D   +  HQ  +  +E    +  +   +  +      +   T+  + 
Sbjct: 536 QLQNDAKNAVSAMDAGKTVTHQGVAASDEAVQVLMSISDRIHDISDRNTQVATATEEQST 595

Query: 485 VSHEIQNKVDVITHHANNTSQSASETREISIDLEHLSQQLESLLNQFTL 533
           V H I   ++ I      T+ +A E  + S  L  LS +L+ L+  F L
Sbjct: 596 VVHTINQNIEEINAINEVTTSTAEELADASKSLRELSGRLDKLVGNFKL 644



 Score = 31.2 bits (69), Expect = 1e-04
 Identities = 53/311 (17%), Positives = 105/311 (33%), Gaps = 43/311 (13%)

Query: 267 DSAKKLTNVAQVTDQAANNQQKETAEVQTNITDMQGKQQQVEFATEEASKLVNHT----- 321
           D   +L N  ++ D           EVQ +    Q K    +     AS L+N +     
Sbjct: 191 DDMVRLLNSFKIEDTGFVFLTNAQGEVQIHRQKEQVKSSLQQIYGSGASALLNKSGFNLI 250

Query: 322 -----------TSIVQQSAKQAHAASEDIKNLVGDIEAVKQRIVELNNQTGQVSSILGVI 370
                       SI  +S       +  +  +  +++AV QR++        +   +G+ 
Sbjct: 251 STDYQGEEVMVASIYIESMDWFLVGTVPVHEVFAELDAVAQRMMLTTLAVAAIFIFMGIF 310

Query: 371 KGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVR-----HLASRTTEATGNIENI--- 422
                  N +A+     A R  + GRG   ++  +       +A  +    G IE I   
Sbjct: 311 LA-----NSIAMPINQIAKRFTDLGRGDGDLSQRIEVKGNDEIAQLSKGFNGFIEKIHQS 365

Query: 423 ---IAGFQRDSQASLSSVDTVCSHAHQRSSEVEELSAAMTRVVSEMQQVLSH-------A 472
              +A   R+ Q +   V       H  S +  + +  +   +++M   +S        A
Sbjct: 366 IKDVAQTSRELQVAAEGVSRKALVTHDNSQQQRDQTIQVVTAINQMGATISEIASNAATA 425

Query: 473 MGIQEQTKRTTEVSHEIQNK----VDVITHHANNTSQSASETREISIDLEHLSQQLESLL 528
                Q     +    + NK    +  + H   NT +   +    + ++  +   +  + 
Sbjct: 426 AETANQASGNADQGRNVVNKAKEAISRLAHDIENTGKVVEQLASTTQEIGSILDAIRGIS 485

Query: 529 NQFTLIAKNSA 539
            Q  L+A N+A
Sbjct: 486 EQTNLLALNAA 496