Pairwise Alignments

Query, 543 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 638 a.a., putative methyl-accepting chemotaxis protein from Pseudomonas putida KT2440

 Score =  179 bits (453), Expect = 4e-49
 Identities = 120/357 (33%), Positives = 194/357 (54%), Gaps = 17/357 (4%)

Query: 185 IMSVIALFGFMLTLFFMRRIIVLPLQKTSAFMCEVSKSKDLSHRLENDRKDELGQLAVSI 244
           + +V+AL   +L  + + R I++PL++T      V+ S DL+  L+  R+DELGQL  S+
Sbjct: 291 VATVLALALGLLAAWAITRQIIIPLRQTLRAAERVA-SGDLTQSLQVQRRDELGQLQASM 349

Query: 245 NSLMDTVSDSLQQVQDTSHSLADSAKKLTNVAQVTDQAANNQQKETAEVQTNITDMQGKQ 304
           + +   + + +  + D    +A +A++L+ V + T    NNQ+ ET +V T +  M    
Sbjct: 350 HRMTQGLRELIGGIGDGVTQIASAAEELSAVTEQTSAGVNNQKVETDQVATAMNQMTATV 409

Query: 305 QQVEFATEEASKLVNHTTSIVQQSAKQAHAASEDIKNLVGDIEAVKQRIVELNNQTGQVS 364
            +V    E+AS+         ++  +    A   I+ L  ++    + +  L  ++ ++ 
Sbjct: 410 HEVARNAEQASEAALMADQQAREGDRVVGEAVAQIERLASEVVNSSEAMNLLKTESDKIG 469

Query: 365 SILGVIKGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRHLASRTTEATGNIENIIA 424
           S+L VIK +A+QTNLLALNAAIEAARAGE GRGFAVVADEVR LA RT ++T  IE +IA
Sbjct: 470 SVLDVIKSVAQQTNLLALNAAIEAARAGEAGRGFAVVADEVRSLAQRTQQSTEEIEELIA 529

Query: 425 GFQRDSQASLSSVDTVCSHAHQRSSEVEELS-------AAMTRVVSEMQQVLSH-AMGIQ 476
           G Q  +Q     V +V  ++ Q +    EL+         +TR VS +Q +    A   +
Sbjct: 530 GLQSGTQ----RVASVMDNSRQLTDSSVELTRRAGSSLETITRTVSSIQAMNQQIATAAE 585

Query: 477 EQTKRTTEVSHEIQNKVDVITHHANNTSQSASETREISIDLEHLSQQLESLLNQFTL 533
           EQT    E++  + N  D+    ++ TS ++ ET   S++L  L   L+ L+ +F L
Sbjct: 586 EQTAVAEEINRSVMNVRDI----SDQTSAASEETASSSVELARLGTHLQGLVGRFRL 638



 Score = 30.0 bits (66), Expect = 3e-04
 Identities = 27/139 (19%), Positives = 58/139 (41%), Gaps = 11/139 (7%)

Query: 401 VADEVRHLASRTTEATGNIENIIAGFQRDSQASLSSVDTVCSHAHQRSSEVEELSAAMTR 460
           + D V  +AS   E +   E   AG           V+T      Q ++ + +++A +  
Sbjct: 363 IGDGVTQIASAAEELSAVTEQTSAGVNNQK------VET-----DQVATAMNQMTATVHE 411

Query: 461 VVSEMQQVLSHAMGIQEQTKRTTEVSHEIQNKVDVITHHANNTSQSASETREISIDLEHL 520
           V    +Q    A+   +Q +    V  E   +++ +     N+S++ +  +  S  +  +
Sbjct: 412 VARNAEQASEAALMADQQAREGDRVVGEAVAQIERLASEVVNSSEAMNLLKTESDKIGSV 471

Query: 521 SQQLESLLNQFTLIAKNSA 539
              ++S+  Q  L+A N+A
Sbjct: 472 LDVIKSVAQQTNLLALNAA 490