Pairwise Alignments

Query, 543 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 674 a.a., hypothetical protein from Alteromonas macleodii MIT1002

 Score =  173 bits (439), Expect = 2e-47
 Identities = 109/366 (29%), Positives = 189/366 (51%), Gaps = 4/366 (1%)

Query: 169 NHLTQMVNHRTLIGVGIMSVIALFGFMLTLFF---MRRIIVLPLQKTSAFMCEVSKSKDL 225
           +H+   VN     G   + V+ +    +  F      R I  PL + +  +  V+ S DL
Sbjct: 308 SHVESQVNGAIATGNTFVIVVVIISIAVAAFIGYVTVRAITRPLYRVNELLT-VASSGDL 366

Query: 226 SHRLENDRKDELGQLAVSINSLMDTVSDSLQQVQDTSHSLADSAKKLTNVAQVTDQAANN 285
           +HRL++  +DE G LA + N+L+  + + +  +   +  LA ++++ + V   T  +  +
Sbjct: 367 THRLDDSAQDEFGLLARNCNTLIGNLKELITAINVRAEQLAAASEQTSAVTAQTTHSIQD 426

Query: 286 QQKETAEVQTNITDMQGKQQQVEFATEEASKLVNHTTSIVQQSAKQAHAASEDIKNLVGD 345
           Q+ +  +V T  T+M    Q V    E+    + H  +  +   + +      I+ L  D
Sbjct: 427 QKSQIGQVATATTEMHSTSQLVVQNAEDTLSQIRHADAEAENVRQISLENKNTIEILSRD 486

Query: 346 IEAVKQRIVELNNQTGQVSSILGVIKGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEV 405
           ++     I +L+  +  +  IL VI+G+A+QTNLLALNAAIEAARAGEQGRGFAVVADEV
Sbjct: 487 VQEAADVINKLHQDSASIGGILDVIRGVADQTNLLALNAAIEAARAGEQGRGFAVVADEV 546

Query: 406 RHLASRTTEATGNIENIIAGFQRDSQASLSSVDTVCSHAHQRSSEVEELSAAMTRVVSEM 465
           R LASRT E+T  I  +I   Q  ++ ++S ++          ++ E+ + A+  +   +
Sbjct: 547 RTLASRTQESTQEINAMIEVLQAGAEKAVSVMNQGKEQTAACVAQTEKATQALDIISDAV 606

Query: 466 QQVLSHAMGIQEQTKRTTEVSHEIQNKVDVITHHANNTSQSASETREISIDLEHLSQQLE 525
            +    +  I++  +    VS EI  K++ I   A  T+  A +T E S ++  L+++L+
Sbjct: 607 HKAHDVSSQIEQSAREQNTVSQEISEKLETIVGIAEETTAGAQQTSESSHEVARLAEELQ 666

Query: 526 SLLNQF 531
             + QF
Sbjct: 667 QSIRQF 672



 Score = 26.9 bits (58), Expect = 0.002
 Identities = 14/96 (14%), Positives = 39/96 (40%)

Query: 255 LQQVQDTSHSLADSAKKLTNVAQVTDQAANNQQKETAEVQTNITDMQGKQQQVEFATEEA 314
           + Q ++ + +     +K T    +   A +     +++++ +  +     Q++    E  
Sbjct: 578 MNQGKEQTAACVAQTEKATQALDIISDAVHKAHDVSSQIEQSAREQNTVSQEISEKLETI 637

Query: 315 SKLVNHTTSIVQQSAKQAHAASEDIKNLVGDIEAVK 350
             +   TT+  QQ+++ +H  +   + L   I   K
Sbjct: 638 VGIAEETTAGAQQTSESSHEVARLAEELQQSIRQFK 673