Pairwise Alignments

Query, 631 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 626 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  312 bits (800), Expect = 2e-89
 Identities = 206/636 (32%), Positives = 330/636 (51%), Gaps = 19/636 (2%)

Query: 5   MKLTLKHKLIGASLSAVVVMATAL-----TWFSASQLQQQTSNAVYTRADAISSTAAKGI 59
           M L   HK++ A+ S VVV+A AL      +   S ++Q   +++    +  +S+    +
Sbjct: 1   MNLKFSHKILLAA-SGVVVLAFALFTLYNDYLQRSTIKQNLESSIQQSGELTASSVQNWL 59

Query: 60  SDWISIRKSISTAFNAHIEAQNVVPYLQQARNAGGFDDIFYGTTDGAMYRSHPERNRAD- 118
           S  I + +S++          ++   + Q      F   + G T+G ++   P+    D 
Sbjct: 60  SGRILVLESLTQNVAHQGSGADLPGLVDQPAFTSNFQFTYVGQTNG-VFTQRPDAKMPDG 118

Query: 119 YDPRTRPWYKDAASAGKQIITTAYSDAITGALLVTIAEPVRLNGNMSGVVGADVLIDQLI 178
           YDPR RPWYK A +A K ++T  Y  A+ G  +VTIA PV+ NG + GVVG D+ +  L+
Sbjct: 119 YDPRQRPWYKQAVAADKPMLTPPYMAAV-GGQIVTIAMPVKKNGELLGVVGGDLSLQTLV 177

Query: 179 ADVISMDAGKNAQTMLIDGQNGSFLAHPDKSLLLKPVTTLSSALDMRTIERAANQGELLA 238
             + S+D G      L+   +G  +  P++  ++K +  +     +R IE+ +       
Sbjct: 178 KIINSVDFGGIGHAFLVSS-DGQVIVSPEQDQVMKNLKDIYPGTQVR-IEKVSQD----- 230

Query: 239 LKLNGVEKFFFFTAV---PDTPWYFAVQMDSDTEYASHSELLTGLITTALLITVIVVVIV 295
           + LNG ++   FT +   P   WY  + +D D  YA   +  T  +   L+  V + V++
Sbjct: 231 VVLNGQDRILSFTPISGLPGADWYIGLSIDKDKAYAPLGKFRTSALIAMLIAVVAIAVLL 290

Query: 296 SWLVSFLFRDLGRVSKALEEIASGDADLTQRLEPRSDDEVGQLASNFNTFVSNMHTMVLK 355
           S L+  L R L  +  A+++IA G+ DLT+RL   S DE G++ S FN FV  +H  + +
Sbjct: 291 SLLIQVLLRPLTTMGVAMQDIAQGEGDLTRRLVVTSKDEFGEVGSAFNQFVERIHASISE 350

Query: 356 LSHVSAALAQQSKVTAAQAEERSSRIRLQQDEINMVATAINEMAAATQEIAGNADHTAQN 415
           +S  +  +   S+   A +         Q    N VA AINE+ AATQEIA NA   +Q+
Sbjct: 351 VSSATRQVHDLSQRVMASSNASIIGSDEQSARTNSVAAAINELGAATQEIARNAADASQH 410

Query: 416 AGEAVTACVHGAGQVTQTQRSIQSLAEEVQVATEVIQELEAHGHQISTILSTIQNIAEQT 475
           A  A      G   V QT  ++  L++++ ++   I+ L A    I  IL  I+ I++QT
Sbjct: 411 ASGASEQADDGRKVVEQTILAMSELSQKISLSCTQIETLNASTDNIGHILDVIKGISQQT 470

Query: 476 NLLALNAAIEAARAGEQGRGFAVVADEVRVLSQRTHASTKEIQQMIETLQATTGKAVGIM 535
           NLLALNAAIEAARAGE GRGFAVVADEVR L+ RT  S +EI +MI +LQ  + +AV  M
Sbjct: 471 NLLALNAAIEAARAGEAGRGFAVVADEVRNLAHRTQESAEEIHKMITSLQVGSREAVTTM 530

Query: 536 DDSRRLADTSVDDANEASVSLEQIHKTVERISDMATQIASAAEEQASVTSEITRNTVGIR 595
           + S+  ++ SV+ AN+A   L  + + +  I  M   +A+A EEQ +V   +  +   I 
Sbjct: 531 NASQTSSEESVEVANQAGERLVSVTQRIVEIDGMNQSVAAATEEQTAVVETLNVDINQIN 590

Query: 596 DVSNDLAQEAHSAAEQAAELSELSHELEQEIRRFKL 631
            ++       +   +    LS+ ++ L+Q +  FK+
Sbjct: 591 LLNQQGVANLNETLKDCDALSQQANRLKQLVDSFKI 626