Pairwise Alignments

Query, 340 a.a., LacI family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 336 a.a., LacI family DNA-binding transcriptional regulator from Serratia liquefaciens MT49

 Score =  213 bits (543), Expect = 4e-60
 Identities = 114/331 (34%), Positives = 191/331 (57%), Gaps = 1/331 (0%)

Query: 1   MARIKDVAELAGVNRSTVSRIINGEGKFKEETRRKVEQAMAQLNYRPSAIARSLATSSSN 60
           M  + DV+  AGV+++TVSR++NG G+ K+ TR  V +AM  L YRP+ +A+SLA  SSN
Sbjct: 1   MITMLDVSIRAGVSKATVSRVLNGTGQVKKSTRDAVFKAMDDLGYRPNFLAQSLANKSSN 60

Query: 61  MMGLLVTYYTGGFFGEMMEQVQTELDMHHKFLITAQGHHSAQGEREAIQRFHDLRCDGYV 120
            +GL+V+ + G +FG ++ +    ++   K LI   GH + + E +A+Q   D RCD  +
Sbjct: 61  SIGLVVSNFDGPYFGRLLRRAAKLIEASGKHLIVTDGHDTPEDELQAVQLLADRRCDAII 120

Query: 121 LHSRYLSDDDLRALAQQ-PTPFVLLDRYVAGLEERCITFDHRGASQIVVEYLIQQGHRKI 179
           L++R++S+  L  L    P P ++++R +     RC+ F+ + A+   V+YLI+QGHR+I
Sbjct: 121 LYTRFMSETALMKLLDSLPVPIMVINRDLPQARARCVFFEQQKAAFHAVDYLIRQGHREI 180

Query: 180 ACITGPLHRHNSRLRQQGYLDALAQAGILPSKSLCEEGNYGRKSGYFAMQQLFARHPEIT 239
           ACITGP+    ++ R  GY  AL Q  I  +++    G+   +SGY   ++L A H + +
Sbjct: 181 ACITGPIATPTAQARLAGYQQALEQHHIAFNEARVAYGDSSVQSGYQGTRRLLAEHIDFS 240

Query: 240 AVFSCSEEMTTGALQYLHEQGIAVPGRISIVSFDSVDLCESLYPTVTAVHFPISEMARAA 299
           A+F+C+++M  GA++ L + G  +P  +S+  FD       L P ++ V+ PI  M  AA
Sbjct: 241 ALFACNDDMAVGAMKALLDAGKRLPQDVSLFGFDDEPSAAYLQPALSTVYLPIDVMIEAA 300

Query: 300 VQSLIAMVKQQPTVGPQSFRPILKKRHADQP 330
           +     ++  + T     F   L+ R +  P
Sbjct: 301 ISQAFRLINGEDTQPLTPFTGELRLRESVLP 331