Pairwise Alignments

Query, 340 a.a., LacI family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 329 a.a., Ribose operon repressor from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  155 bits (392), Expect = 1e-42
 Identities = 103/336 (30%), Positives = 164/336 (48%), Gaps = 24/336 (7%)

Query: 4   IKDVAELAGVNRSTVSRIINGEGKFKEETRRKVEQAMAQLNYRPSAIARSLATSSSNMMG 63
           +KDVA LAGV+ STVS +IN +    E    KVE A+  LNY PSA+ARSL  + +  +G
Sbjct: 1   MKDVARLAGVSTSTVSHVINKDRFVSETITEKVEAAIKSLNYAPSALARSLKLNQTRTIG 60

Query: 64  LLVTYYTGGFFGEMMEQVQTELDMHHKFLITAQGHHSAQGEREAIQRFHDLRCDGYVLHS 123
           +L+T  T  F+ E++  V+         L+        Q     ++     R DG +L  
Sbjct: 61  MLITASTNPFYSELVRGVERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLC 120

Query: 124 RYLSDDDLRALAQQPT-PFVLLDRYVAGLEERCITFDHRGASQIV-----------VEYL 171
                     + + P+ P V++D            FD  G S ++            +YL
Sbjct: 121 TETHQPSREIMERYPSIPTVMMD---------WSPFDGEGDSDLIQDNSLLGGDLATQYL 171

Query: 172 IQQGHRKIACITGPLHRHNSRLRQQGYLDALAQAGILPSKSLCEEGNYGRKSGYFAMQQL 231
           I +G  +IACITGPL +  +RLR +GY  A+ +AG+   +     G++    G+ AMQ L
Sbjct: 172 IDKGFTRIACITGPLDKTPARLRLEGYRAAMKRAGLAIPQGYEITGDFEFGGGFDAMQAL 231

Query: 232 FARHPEITAVFSCSEEMTTGALQYLHEQGIAVPGRISIVSFDSVDLCESLYPTVTAVHFP 291
            A      AVF+ ++ M  GA Q L++ G+ +P  + ++ +D ++L   + P +T +H P
Sbjct: 232 LAHQQRPQAVFTGNDAMAVGAYQALYQAGLRIPQDMVVIGYDDIELARYMTPPLTTIHQP 291

Query: 292 ISEMARAAVQSLIAMVKQQPTVGPQSFR--PILKKR 325
             E+   A+  LI  +  QP +  Q  +  P+L  R
Sbjct: 292 KDELGELAIDVLIHRM-AQPALQQQRLQLTPVLTVR 326