Pairwise Alignments

Query, 340 a.a., LacI family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 343 a.a., DNA-binding transcriptional repressor (NCBI) from Escherichia coli BW25113

 Score =  210 bits (535), Expect = 4e-59
 Identities = 123/328 (37%), Positives = 181/328 (55%), Gaps = 1/328 (0%)

Query: 1   MARIKDVAELAGVNRSTVSRIINGEGKFKEETRRKVEQAMAQLNYRPSAIARSLATSSSN 60
           MA IKDVA LAGV+ +TVSR+IN   K  E +R  V  AM  L+Y P+A AR+LA  ++ 
Sbjct: 1   MATIKDVARLAGVSVATVSRVINNSPKASEASRLAVHSAMESLSYHPNANARALAQQTTE 60

Query: 61  MMGLLVTYYTGGFFGEMMEQVQTELDMHHKFLITAQGHHSAQGEREAIQRFHDLRCDGYV 120
            +GL+V   +  FFG M++ V+        FL+   G+H+ Q ER+AI++    RC   V
Sbjct: 61  TVGLVVGDVSDPFFGAMVKAVEQVAYHTGNFLLIGNGYHNEQKERQAIEQLIRHRCAALV 120

Query: 121 LHSRYLSDDDLRALAQQPTPFVLLDRYVAGLEERCITFDHRGASQIVVEYLIQQGHRKIA 180
           +H++ + D DL +L +Q    VL++R + G E RCI  D R  + +   +LIQQGH +I 
Sbjct: 121 VHAKMIPDADLASLMKQMPGMVLINRILPGFENRCIALDDRYGAWLATRHLIQQGHTRIG 180

Query: 181 CITGPLHRHNSRLRQQGYLDALAQAGILPSKSLCEEGNYGRKSGYFAMQQLFARHPEITA 240
            +       ++  R QGY DALA++GI  +  L   G      G  AM +L  R    TA
Sbjct: 181 YLCSNHSISDAEDRLQGYYDALAESGIAANDRLVTFGEPDESGGEQAMTELLGRGRNFTA 240

Query: 241 VFSCSEEMTTGALQYLHEQGIAVPGRISIVSFDSVDLCESLYPTVTAVHFPISEMARAAV 300
           V   ++ M  GA+  L++ GI VPG IS++ FD V +   + P +T V +PI  MA  A 
Sbjct: 241 VACYNDSMAAGAMGVLNDNGIDVPGEISLIGFDDVLVSRYVRPRLTTVRYPIVTMATQAA 300

Query: 301 QSLIAMVKQQPTVG-PQSFRPILKKRHA 327
           +  +A+   +P       F P L +RH+
Sbjct: 301 ELALALADNRPLPEITNVFSPTLVRRHS 328