Pairwise Alignments

Query, 340 a.a., LacI family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 336 a.a., DNA-binding transcriptional repressor (NCBI) from Escherichia coli BW25113

 Score =  195 bits (496), Expect = 1e-54
 Identities = 110/328 (33%), Positives = 190/328 (57%), Gaps = 3/328 (0%)

Query: 1   MARIKDVAELAGVNRSTVSRIINGEGKFKEETRRKVEQAMAQLNYRPSAIARSLATSSSN 60
           M  + +VA+ AGV+++TVSR+++G G   +ET+ +V QA+ +  YRP+ +AR+L+  S+ 
Sbjct: 1   MTTMLEVAKRAGVSKATVSRVLSGNGYVSQETKDRVFQAVEESGYRPNLLARNLSAKSTQ 60

Query: 61  MMGLLVT--YYTGGFFGEMMEQVQTELDMHHKFLITAQGHHSAQGEREAIQRFHDLRCDG 118
            +GL+VT   Y G +F E++       +   + L+ A G HSA+ ER+AIQ   DLRCD 
Sbjct: 61  TLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDLRCDA 120

Query: 119 YVLHSRYLSDDDLRALAQQPT-PFVLLDRYVAGLEERCITFDHRGASQIVVEYLIQQGHR 177
            +++ R+LS D++  +    + P ++L+R +       +  DH+  S   V  LI  GH+
Sbjct: 121 IMIYPRFLSVDEIDDIIDAHSQPIMVLNRRLRKNSSHSVWCDHKQTSFNAVAELINAGHQ 180

Query: 178 KIACITGPLHRHNSRLRQQGYLDALAQAGILPSKSLCEEGNYGRKSGYFAMQQLFARHPE 237
           +IA +TG +    S  R  GY DALAQ GI  ++ L   G +   SG   ++ L  R  +
Sbjct: 181 EIAFLTGSMDSPTSIERLAGYKDALAQHGIALNEKLIANGKWTPASGAEGVEMLLERGAK 240

Query: 238 ITAVFSCSEEMTTGALQYLHEQGIAVPGRISIVSFDSVDLCESLYPTVTAVHFPISEMAR 297
            +A+ + +++M  GA++ LHE+G+AVP ++S++ FD + +     P +++V  P++EM +
Sbjct: 241 FSALVASNDDMAIGAMKALHERGVAVPEQVSVIGFDDIAIAPYTVPALSSVKIPVTEMIQ 300

Query: 298 AAVQSLIAMVKQQPTVGPQSFRPILKKR 325
             +  LI M+       P++F   L +R
Sbjct: 301 EIIGRLIFMLDGGDFSPPKTFSGKLIRR 328