Pairwise Alignments

Query, 340 a.a., LacI family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 346 a.a., DNA-binding transcriptional repressor (NCBI) from Escherichia coli BW25113

 Score =  201 bits (510), Expect = 3e-56
 Identities = 110/343 (32%), Positives = 191/343 (55%), Gaps = 11/343 (3%)

Query: 1   MARIKDVAELAGVNRSTVSRIINGEGKFKEETRRKVEQAMAQLNYRPSAIARSLATSSSN 60
           M  I+DVA  AGV+ +TVSR++N       +TR  V +A+++L+YRP+A A++LAT  S+
Sbjct: 1   MITIRDVARQAGVSVATVSRVLNNSTLVSADTREAVMKAVSELDYRPNANAQALATQVSD 60

Query: 61  MMGLLVTYYTGGFFGEMMEQVQTELDMHHKFLITAQGHHSAQGEREAIQRFHDLRCDGYV 120
            +G++V   +  FFG +++ V      H K+++    +H A+ ER AI+     RC+  +
Sbjct: 61  TIGVVVMDVSDAFFGALVKAVDLVAQQHQKYVLIGNSYHEAEKERHAIEVLIRQRCNALI 120

Query: 121 LHSRYLSDDDLRALAQQPTPFVLLDRYVAGLEERCITFDHRGASQIVVEYLIQQGHRKIA 180
           +HS+ LSDD+L          VL++R V G   RC+  D+   +++    L+  GH++I 
Sbjct: 121 VHSKALSDDELAQFMDNIPGMVLINRVVPGYAHRCVCLDNLSGARMATRMLLNNGHQRIG 180

Query: 181 CITGPLHRHNSRLRQQGYLDALAQAGILPSKSLCEEGNYGRKSGYFAMQQLFARHPEITA 240
            ++      +  +R+ G++ AL +  I+P +S    G      G  AM +L  R+ ++TA
Sbjct: 181 YLSSSHGIEDDAMRKAGWMSALKEQDIIPPESWIGAGTPDMPGGEAAMVELLGRNLQLTA 240

Query: 241 VFSCSEEMTTGALQYLHEQGIAVPGRISIVSFDSVDLCESLYPTVTAVHFPISEMARAAV 300
           VF+ ++ M  GAL  L + GIA+P  +SI+ FD + +     P +T V +PI+ MA+ A 
Sbjct: 241 VFAYNDNMAAGALTALKDNGIAIPLHLSIIGFDDIPIARYTDPQLTTVRYPIASMAKLAT 300

Query: 301 QSLIAMVKQQPTVGPQS---FRPILKKRHADQPLSKIAERQDS 340
           +  +A+      + P++   F P L +RH+      +A RQ++
Sbjct: 301 E--LALQGAAGNIDPRASHCFMPTLVRRHS------VATRQNA 335