Pairwise Alignments

Query, 540 a.a., BCCT family transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 504 a.a., Glycine betaine transporter OpuD from Variovorax sp. SCN45

 Score =  374 bits (960), Expect = e-108
 Identities = 210/490 (42%), Positives = 300/490 (61%), Gaps = 14/490 (2%)

Query: 42  ISAGLIAAFLLLTVLVDAHQAKIGLDTVKQSIIASFDWLFIWSGNLFLLFCVGLVISPFG 101
           +SAGLIAA +L  +L  A    +   T    I  +F W ++W     ++    L  S FG
Sbjct: 5   VSAGLIAAVVLWGLLSPASLDSV-FSTALSGITRNFGWFYLWVVLGLVVLAFFLAFSRFG 63

Query: 102 KIRLGGQAAKADHSFLSWLAMLFAAGMGIGLMFWSVAEPVAYYTGWYETPLGVEANTPQA 161
            ++LG +  + + S  +W AMLFAAGMGIGL+FW VAEP+++Y      P GV A TP A
Sbjct: 64  DLKLGEEDDEPEFSLGAWFAMLFAAGMGIGLVFWGVAEPISHYAN---PPPGVVAGTPDA 120

Query: 162 AQLAMGATMFHWGLHPWAIYGVVALSLAFFCYNKGLPLSMRSVFYPLLGDRAWGWAGHVV 221
           A +AM    FHWGLHPWAIYG+V LS+AFF + +   L++ S     L  R         
Sbjct: 121 AGVAMRYAFFHWGLHPWAIYGIVGLSIAFFTFRRKT-LALVSSATEALPWRFVRRLSPAF 179

Query: 222 DILAVLATLFGLATSLGLGAQQAASGIHHVFGFESGIGLQIAVICVVTGLATLSVVRGID 281
           ++LAV+AT FG+A SLG+GA Q  SG+H  FG   G G Q A+I V T L   S V G++
Sbjct: 180 NVLAVVATAFGVAASLGMGATQINSGLHAAFGTAIGRGTQAAIIVVTTVLFVTSAVSGVE 239

Query: 282 GGVKVISNINMIVAFLLLALVAVIGYSVTLTSIPT-TLMAYLQNLIPLS---NPHGREDE 337
            GVK +S  N+++A LL  +V V+G +V +    T TL AY+   + +S   NP    + 
Sbjct: 240 RGVKWLSMGNLVLAALLALVVLVLGPTVAIVETFTNTLGAYIAEFVRMSLRMNPF--RNS 297

Query: 338 VWFQGWTVFYWAWWISWSPFVGMFIARVSKGRTIREFIVAVLLIPTLVTLVWMSVFGGLA 397
            W   WT+FYWAWW++WSPFVG+FIARVS+GRTIR+FI+  ++ PTLV   W SVFGG A
Sbjct: 298 SWVGDWTLFYWAWWLAWSPFVGLFIARVSRGRTIRQFILGTVIAPTLVGFAWFSVFGGAA 357

Query: 398 VDQVINEIGVLGQNGLTDVSLAMFQMFDSLVFGKVLSVIAVVLVLVFFITSSDSGSLVID 457
           ++  I +   L +    DVS  MF MF ++  G +LS++A +LV VFF+TS DS +LV+ 
Sbjct: 358 LNFQIFQGVPLVEAVKADVSTTMFVMFKAMPMGALLSMVATLLVFVFFVTSGDSATLVLG 417

Query: 458 SITSGGKLDSPVLQRVFWAVLEGAVAVALLWIGGTEAVQALQAGVISTALPFTVILLLMC 517
           ++++GG  + P   ++ W VL  A+A++LL+ GG   ++A+Q   I  ALPF  ++LLM 
Sbjct: 418 TMSTGGNPNPPARVKITWGVLVAAIALSLLFAGG---LKAIQTATIVFALPFAFVILLMA 474

Query: 518 VSLWKGLKTE 527
           +S+   ++ +
Sbjct: 475 LSVTLAIRDD 484