Pairwise Alignments

Query, 540 a.a., BCCT family transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 567 a.a., Choline/carnitine/betaine transporter family protein from Pseudomonas putida KT2440

 Score =  379 bits (974), Expect = e-109
 Identities = 211/509 (41%), Positives = 305/509 (59%), Gaps = 38/509 (7%)

Query: 47  IAAFLLLTVLVDAHQAKIGLDTVKQSIIASFDWLFIWSGNLFLLFCVGLVISPFGKIRLG 106
           + AF+L   L   H A +        I+ +F W ++ S    L   + L+ S FG ++LG
Sbjct: 23  VVAFVLFCALFAEHAAAV-FQRASDFILQNFKWFYLISVTGVLGLLIYLMCSKFGSMKLG 81

Query: 107 GQAAKADHSFLSWLAMLFAAGMGIGLMFWSVAEPVAYYTGWYETPLGVEANTPQAAQLAM 166
               K + SF SW+AMLF+ GMGIGL+FWSVAEP+ +Y G    P      T +AA  AM
Sbjct: 82  RDDDKPEFSFGSWIAMLFSGGMGIGLIFWSVAEPMWHYAG---NPFATGL-TDEAATTAM 137

Query: 167 GATMFHWGLHPWAIYGVVALSLAFFCYNKGLPLSMRSVFYPLLGDRAWGWAGHVVDILAV 226
             T+FHWGLHPWAI+ +V L LA+F Y KGLPLSMRS+ YPL+G+R +G  GHVVDILAV
Sbjct: 138 RITLFHWGLHPWAIFTIVGLGLAYFAYRKGLPLSMRSILYPLIGERIYGPIGHVVDILAV 197

Query: 227 LATLFGLATSLGLGAQQAASGIHHVFGFESGIGLQIAVICVVTGLATLSVVRGIDGGVKV 286
           + T FG++ SLGLG  Q  +G+  VF     +G+QI +I ++T + T+SV+ G+  G+K 
Sbjct: 198 VITAFGVSQSLGLGVVQMNTGLSQVFDLPISLGVQITLIVLITLVTTVSVMAGVSRGMKR 257

Query: 287 ISNINMIVAFLLLALVAVIG---YSVTLTSIPTTLMAYLQNLIPLSN-PHGREDEVWFQG 342
           +S  NM+++ +L+ L+ ++G   Y + L    T    Y  +++ LS     ++D  W   
Sbjct: 258 LSEWNMLLSVVLVVLILLLGPTRYIINLMLESTG--DYASHVVGLSFWSDTQKDSGWQNW 315

Query: 343 WTVFYWAWWISWSPFVGMFIARVSKGRTIREFIVAVLLIPTLVTLVWMSVFGGLAV---- 398
           WT FYW WW++W PFVG+FIAR+SKGR+IRE I   LL+PTLVT++WMSVFGG A+    
Sbjct: 316 WTAFYWPWWMTWGPFVGLFIARISKGRSIRELIAGALLVPTLVTIIWMSVFGGTALKAEQ 375

Query: 399 -----------------DQVINEIGVLGQNGLTDVSLAMFQM---FDSLVFGKVLSVIAV 438
                            D+   E G +      + + AMF +    D+   GKVLSV+  
Sbjct: 376 LDRQQHAELVASGELQGDKAKYEGGTVLLATKQETTAAMFTLLHKIDAGTLGKVLSVLVC 435

Query: 439 VLVLVFFITSSDSGSLVIDSITSGGKLDSPVLQRVFWAVLEGAVAVALLWIGGTEAVQAL 498
           +L+  +FITS+DSG+ V+ ++ S G  + P   R+ W +LEGA+A+ALL  GG   ++A+
Sbjct: 436 ILLATYFITSADSGTQVLCTLNSMGSANPPQSIRLLWCILEGAIAMALLMAGG---LKAI 492

Query: 499 QAGVISTALPFTVILLLMCVSLWKGLKTE 527
           Q   I+  LP    +LL+  +L + L+ E
Sbjct: 493 QMASIAAGLPIAGFILLISYTLMRSLRQE 521