Pairwise Alignments

Query, 540 a.a., BCCT family transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 581 a.a., Choline/carnitine/betaine transporter family protein from Pseudomonas putida KT2440

 Score =  368 bits (944), Expect = e-106
 Identities = 197/500 (39%), Positives = 307/500 (61%), Gaps = 14/500 (2%)

Query: 39  VFGISAGLIAAFLLLTVLVDAHQAKIGLDTVKQSIIASFDWLFIWSGNLFLLFCVGLVIS 98
           VFG ++ L  AF+L   L  A  A     + +  +I +F W F+ + +LF++F + L  S
Sbjct: 37  VFGFTSLLAIAFVLWGFLNQASLAS-SASSAQSWVILNFGWFFVLTSSLFVVFVLWLAAS 95

Query: 99  PFGKIRLGGQAAKADHSFLSWLAMLFAAGMGIGLMFWSVAEPVAYYTGWYETPLGVEANT 158
            +G++ LG    + +   +SW+AM+F+AGMGIGLMF+ VAEP+++Y      P      T
Sbjct: 96  RYGRVPLGRDGEQPEFRTVSWVAMMFSAGMGIGLMFFGVAEPLSHYIS--PPPGSASGQT 153

Query: 159 PQAAQLAMGATMFHWGLHPWAIYGVVALSLAFFCYNKGLPLSMRSVFYPLLGDRAWGWAG 218
            +A Q+AM  T+FHW LHPWA+Y +V L +A+  + +G    + + F PL+G  A G  G
Sbjct: 154 SEAMQVAMATTLFHWTLHPWAMYAIVGLVIAYGTFRRGRSQLISAAFRPLIGKHANGPLG 213

Query: 219 HVVDILAVLATLFGLATSLGLGAQQAASGIHHVFGFES-GIGLQIAVICVVTGLATLSVV 277
            ++D++A+ ATLFG A SLGLGA Q A G+ +    ES G    I++I ++T     S V
Sbjct: 214 RLIDMMAIFATLFGSAASLGLGALQIAGGLEYNGWIESPGKLFYISIITLLTIAFVTSAV 273

Query: 278 RGIDGGVKVISNINMIVAFLLLALVAVIGYSVTLTSI-PTTLMAYLQNLIPL---SNPHG 333
            GI  G++ +SN NM++A +L   V ++G ++ + ++ PT+L  Y++ L  +   +N  G
Sbjct: 274 SGIGKGIQWLSNTNMVLALVLAVFVFMVGPTLLMLNLLPTSLGIYIKMLPEMMARTNASG 333

Query: 334 RED-EVWFQGWTVFYWAWWISWSPFVGMFIARVSKGRTIREFIVAVLLIPTLVTLVWMSV 392
            E    W  GWTVFYWAWWISW+PFVGMFIAR+S+GRTIR+F+  VLL+P+LV+LVW ++
Sbjct: 334 GEQMNSWLAGWTVFYWAWWISWTPFVGMFIARISRGRTIRQFVTGVLLVPSLVSLVWFTI 393

Query: 393 FGGLAVDQVINEIGVLGQNGLTDVSLAMFQMFDSLVFGKVLSVIAVVLVLVFFITSSDSG 452
           FGG A+ + + E      NG  + + A++Q+ DS       SV+ ++LV +FF++ +D+ 
Sbjct: 394 FGGAAI-EAVREGAFQLANGAVNSNHALYQLLDSYPLASATSVLVMILVGIFFVSGADAA 452

Query: 453 SLVIDSITSGGKLDSPVLQRVFWAVLEGAVAVALLWIGGT----EAVQALQAGVISTALP 508
           SLV+ +++  G         +FW  L G VA  +L IG      EA+  LQ   I  ALP
Sbjct: 453 SLVMGTLSEHGTTAPSRRTVIFWGTLTGTVAAIMLAIGDPGNPGEALTGLQNLTIVVALP 512

Query: 509 FTVILLLMCVSLWKGLKTEP 528
           F V+++L+C++L++ L+ +P
Sbjct: 513 FVVVMVLLCLALYRDLRKDP 532