Pairwise Alignments

Query, 540 a.a., BCCT family transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 667 a.a., choline/carnitine/betaine transporter from Pseudomonas putida KT2440

 Score =  339 bits (870), Expect = 2e-97
 Identities = 192/500 (38%), Positives = 294/500 (58%), Gaps = 17/500 (3%)

Query: 38  PVFGISAGLIAAFLLLTVLVDAHQAKIGLDTVKQSIIASFDWLFIWSGNLFLLFCVGLVI 97
           PVF  +A  I  F L+ V+ +   A   L   +     +  W ++ +  L+L+F V   +
Sbjct: 18  PVFYFAASFILIFGLV-VISNPQAAGDWLLAAQNWAANTVGWYYMLAMTLYLVFVVVTAL 76

Query: 98  SPFGKIRLGGQAAKADHSFLSWLAMLFAAGMGIGLMFWSVAEPVAYYTGWYETPLGVEAN 157
           S +GKI+LG    + + S+LSW  MLFAAG+ I L F+ V+EP+   T   + P G EA 
Sbjct: 77  SGYGKIKLGADHDEPEFSYLSWAGMLFAAGISITLFFFCVSEPL---THMLQPPQG-EAG 132

Query: 158 TPQAAQLAMGATMFHWGLHPWAIYGVVALSLAFFCYNKGLPLSMRSVFYPLLGDRAWGWA 217
           T +A + AM     HWGLH W ++  V ++LA+F Y   LPL++RS  YPL+G R  G  
Sbjct: 133 TVEAGRQAMQILFLHWGLHGWGVFAFVGMALAYFAYRHNLPLALRSALYPLIGKRINGPI 192

Query: 218 GHVVDILAVLATLFGLATSLGLGAQQAASGIHHVFGFESGIGLQIAVICVVTGLATLSVV 277
           G+ VD   ++AT+FGL   +G G     +G+ ++FG      +Q+ +I ++ G A    V
Sbjct: 193 GYAVDGFGIIATVFGLGADMGFGVLHLNAGLDYLFGISHSQWVQVILITLMMGAAVAVAV 252

Query: 278 RGIDGGVKVISNINMIVAFLLLALVAVIGYSVTL-TSIPTTLMAYLQNLIPLS---NPHG 333
            G++ GV+V+S+IN+ +A  LL  V   G +  L  ++   L  YL  L   S     +G
Sbjct: 253 AGVEKGVRVMSDINLFLACALLLFVLFAGPTQHLFNTLIQNLGDYLGALPRKSFDVYAYG 312

Query: 334 REDEVWFQGWTVFYWAWWISWSPFVGMFIARVSKGRTIREFIVAVLLIPTLVTLVWMSVF 393
            E+  W  GWTVFYWAWWI+W+PFVG+FIAR+S+GRTIREF+  VLLIP   TL WMS+F
Sbjct: 313 -ENRGWLGGWTVFYWAWWIAWAPFVGLFIARISRGRTIREFVFGVLLIPLGFTLAWMSIF 371

Query: 394 GGLAVDQVINE-IGVLGQNGLTDVSLAMFQMFDSLVFGKVLSVIAVVLVLVFFITSSDSG 452
           G  A+DQVIN  +  LGQ+ L + S++++ + ++  + K +    V +  VFF+TS+DSG
Sbjct: 372 GNSALDQVINHGMTALGQSALDNPSMSLYLLLETYPWSKAVIATTVFISFVFFVTSADSG 431

Query: 453 SLVIDSITSGG---KLDSPVLQRVFWAVLEGAVAVALLWIGGTEAVQALQAGVISTALPF 509
           ++V+ ++++ G     D P   R+FW  +   +  ALL+ G   ++ +L++ V+ T+LPF
Sbjct: 432 TVVLSTLSAKGGDADEDGPNWLRIFWGAMTALITSALLFAG---SIDSLKSAVVLTSLPF 488

Query: 510 TVILLLMCVSLWKGLKTEPE 529
           ++ILL M   L K    E +
Sbjct: 489 SLILLCMMWGLHKAFYLESQ 508