Pairwise Alignments

Query, 540 a.a., BCCT family transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 666 a.a., choline transporter BetT from Pseudomonas protegens RBAN4

 Score =  348 bits (893), Expect = e-100
 Identities = 195/510 (38%), Positives = 300/510 (58%), Gaps = 22/510 (4%)

Query: 38  PVFGISAGLIAAFLLLTVLVDAHQAKIGLDTVKQSIIASFDWLFIWSGNLFLLFCVGLVI 97
           PVF  +A  I  F ++ + +   QA   L   +     +  W ++ +  L+L+F V   +
Sbjct: 17  PVFYFAASFILIFGVVVISMP-EQAGAWLLAAQNWAANTVGWYYMLAMTLYLVFVVVTAL 75

Query: 98  SPFGKIRLGGQAAKADHSFLSWLAMLFAAGMGIGLMFWSVAEPVAYYTGWYETPLGVEAN 157
           S +GKI+LG    + + S+LSW  MLFAAG+ I L F+ V+EP+   T   + P G EA 
Sbjct: 76  SGYGKIKLGADHDEPEFSYLSWAGMLFAAGISITLFFFCVSEPL---THMLQPPQG-EAG 131

Query: 158 TPQAAQLAMGATMFHWGLHPWAIYGVVALSLAFFCYNKGLPLSMRSVFYPLLGDRAWGWA 217
           T +AA+  M     HWGLH W ++  V ++LA+F Y   LPL++RS  YPL+G R  G  
Sbjct: 132 TAEAARQGMQLLFLHWGLHGWGVFAFVGMALAYFAYRHNLPLALRSALYPLIGKRINGPI 191

Query: 218 GHVVDILAVLATLFGLATSLGLGAQQAASGIHHVFGFESGIGLQIAVICVVTGLATLSVV 277
           G+ VD   ++AT+FGL   +G G     SG+ ++FG      +Q+ +I ++ G A +  V
Sbjct: 192 GYAVDGFGIIATVFGLGADMGFGVLHLNSGLDYLFGIAHTQWIQVGLITLMMGAAIIVAV 251

Query: 278 RGIDGGVKVISNINMIVAFLLLALVAVIGYSV-TLTSIPTTLMAYLQNLIPLS---NPHG 333
            G+D GV+V+S+INM++A  LL  V   G +   L ++   L  YL  L   S     + 
Sbjct: 252 SGVDKGVRVMSDINMLLAVALLLFVLFAGPTQHLLNTLIQNLGDYLGALPTKSFDVYAYN 311

Query: 334 REDEVWFQGWTVFYWAWWISWSPFVGMFIARVSKGRTIREFIVAVLLIPTLVTLVWMSVF 393
           +  + W  GWTVFYWAWWI+WSPFVG+FIAR+S+GRTIREF+  VLLIP   TL WMS+F
Sbjct: 312 KPSD-WLGGWTVFYWAWWIAWSPFVGLFIARISRGRTIREFVFGVLLIPLGFTLAWMSIF 370

Query: 394 GGLAVDQVINE-IGVLGQNGLTDVSLAMFQMFDSLVFGKVLSVIAVVLVLVFFITSSDSG 452
           G  A+DQV+N  +  LG + + + S+ ++ + ++  + K +  + V +  VFF+TS+DSG
Sbjct: 371 GNSAIDQVLNHGMSALGMSAIDNPSMTLYLLLETYPWSKTVIAVTVFISFVFFVTSADSG 430

Query: 453 SLVIDSITSGG---KLDSPVLQRVFWAVLEGAVAVALLWIGGTEAVQALQAGVISTALPF 509
           ++V+ ++++ G     D P   RVFW  +   V  ALL+ G   ++ +L++ V+ T+LPF
Sbjct: 431 TVVLSTLSAKGGNADEDGPKWLRVFWGAMTALVTSALLFAG---SIDSLKSAVVLTSLPF 487

Query: 510 TVILLLMCVSLWKGLKTEPEFMASSKRLHQ 539
           ++ILLLM   L K       ++ S +R+ Q
Sbjct: 488 SLILLLMMWGLHKAF-----YLESQRRIAQ 512