Pairwise Alignments

Query, 540 a.a., BCCT family transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 679 a.a., choline transporter from Serratia liquefaciens MT49

 Score =  335 bits (859), Expect = 3e-96
 Identities = 183/505 (36%), Positives = 296/505 (58%), Gaps = 15/505 (2%)

Query: 37  NPV-FGISAGLIAAFLLLTVLVDAHQAKIGLDTVKQSIIASFDWLFIWSGNLFLLFCVGL 95
           NPV F  SAGLI AF L+T+       +    T+   +  +F W ++ +  L+++F V +
Sbjct: 16  NPVVFFTSAGLILAFSLMTIFFTDFSGRWITRTLNW-VSTTFGWYYLLAATLYIVFVVFI 74

Query: 96  VISPFGKIRLGGQAAKADHSFLSWLAMLFAAGMGIGLMFWSVAEPVAYYTGWYETPLGVE 155
             S FG I+LG + +K + S +SW AMLFAAG+GI LMF+SVAEPV  Y      P   +
Sbjct: 75  AASRFGSIKLGPEQSKPEFSLMSWAAMLFAAGIGIDLMFFSVAEPVTQYM----MPPEGQ 130

Query: 156 ANTPQAAQLAMGATMFHWGLHPWAIYGVVALSLAFFCYNKGLPLSMRSVFYPLLGDRAWG 215
             T +AA+ AM  T+FH+GL  W++Y ++ ++L +F Y   LPL++RS  YP+ G R  G
Sbjct: 131 GQTMEAARQAMVWTLFHYGLTGWSMYALMGIALGYFSYRYNLPLTIRSALYPIFGKRING 190

Query: 216 WAGHVVDILAVLATLFGLATSLGLGAQQAASGIHHVFGFESGIGLQIAVICVVTGLATLS 275
             GH VDI AVL T+FG+AT+LG+G  Q   G+  +F     + +Q A+I +   +AT+S
Sbjct: 191 PIGHSVDIAAVLGTIFGIATTLGIGVVQLNYGLKVLFHIPENLTVQAALILLSVIMATIS 250

Query: 276 VVRGIDGGVKVISNINMIVAFLLLALVAVIG-YSVTLTSIPTTLMAYLQNLIPLS-NPHG 333
           V  G++ G++++S +N+++A  L+  V   G     L ++   +  Y+   + ++ N   
Sbjct: 251 VTSGVNKGIRILSELNVLLALGLIMFVLFFGDTEFLLNALVLNVGDYVNRFMGMTLNSFA 310

Query: 334 REDEV-WFQGWTVFYWAWWISWSPFVGMFIARVSKGRTIREFIVAVLLIPTLVTLVWMSV 392
            +  V W   WT+F+WAWW++W+PFVG+F+AR+S+GRTIR+F+V  L+IP + TL+W+S+
Sbjct: 311 FDRPVEWMNNWTLFFWAWWVAWAPFVGLFLARISRGRTIRQFVVGTLIIPFVFTLLWLSI 370

Query: 393 FGGLAVDQVINEIGVLGQNGLTDVSLAMFQMFDSLVFGKVLSVIAVVLVLVFFITSSDSG 452
           FG  A+ Q+I+      Q  +       + +          + +A +  L+F++TS+DSG
Sbjct: 371 FGNSALYQIIHGNAAFAQEVMQYPERGFYSLLAQYPGFTFSASVATITGLLFYVTSADSG 430

Query: 453 SLVIDSIT---SGGKLDSPVLQRVFWAVLEGAVAVALLWIGGTEAVQALQAGVISTALPF 509
           SLV+ + T   S    D+P   R+FW++  G + + +L    T+ V ALQ   +   LPF
Sbjct: 431 SLVLGNFTSRLSDINNDAPNWLRIFWSITIGLLTIGMLM---TDGVPALQKTTVIMGLPF 487

Query: 510 TVILLLMCVSLWKGLKTEPEFMASS 534
           + ++  +   L+K L+ E    AS+
Sbjct: 488 SFVIFFVMAGLYKSLRVEDYRKASA 512