Pairwise Alignments

Query, 540 a.a., BCCT family transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 678 a.a., High-affinity choline transport protein from Alteromonas macleodii MIT1002

 Score =  392 bits (1008), Expect = e-113
 Identities = 209/496 (42%), Positives = 314/496 (63%), Gaps = 16/496 (3%)

Query: 38  PVFGISAGLIAAFLLLTVLVDAHQAKIGLDTVKQSIIASFDWLFIWSGNLFLLFCVGLVI 97
           PVF + A +I   L++  + +   A    D+    I  +F W ++ S  +FL+F V +  
Sbjct: 13  PVF-LPAVVIILLLVIGTISNPELAGDAFDSTLAWITETFGWFYMLSVAIFLVFIVSVAS 71

Query: 98  SPFGKIRLGGQAAKADHSFLSWLAMLFAAGMGIGLMFWSVAEPVAYYTGWYETPLGVEAN 157
           S +G I+LG   A+  +SF  W +MLF+AG G+ L+++ VAEPV +Y+    +P    A 
Sbjct: 72  SSWGNIKLGPDHAEPQYSFPEWFSMLFSAGYGVALLYFGVAEPVLHYS----SPPAGAAE 127

Query: 158 TPQAAQLAMGATMFHWGLHPWAIYGVVALSLAFFCYNKGLPLSMRSVFYPLLGDRAWGWA 217
           T  AA+ AM    FHWG H WAIYG+V L LA+F +  GLPLS+RS  YPL+GD+ +G  
Sbjct: 128 TVDAAKQAMQIAFFHWGFHIWAIYGLVGLVLAYFAFRHGLPLSIRSALYPLIGDKIYGPI 187

Query: 218 GHVVDILAVLATLFGLATSLGLGAQQAASGIHHVFG-FESGIGLQIAVICVVTGLATLSV 276
           GH VD+ A+L TLFG+AT+LGL   Q  +G++++ G     I +Q+  I +VT  AT+SV
Sbjct: 188 GHAVDVFAILGTLFGIATTLGLSVTQINAGLNYLSGDIPIDIMVQVGTIAIVTIAATISV 247

Query: 277 VRGIDGGVKVISNINMIVAFLLLALVAVIGYSV-TLTSIPTTLMAYLQNLIPLS---NPH 332
           V G+D G+K +S +NM++A  L++ V + G +V  L +      +Y+  +I  +     +
Sbjct: 248 VAGMDKGIKRLSILNMVLAVSLMSTVFIFGETVHILETFLQNTGSYINGIIERTFNLQAY 307

Query: 333 GREDEVWFQGWTVFYWAWWISWSPFVGMFIARVSKGRTIREFIVAVLLIPTLVTLVWMSV 392
            R D  W   WT+F + W I+W+PFVGMFIA++S+GRTIR+F+  V+L+PT+ T +W SV
Sbjct: 308 SRSD--WIGNWTLFIFGWTIAWAPFVGMFIAKISRGRTIRQFVFGVMLVPTMFTFLWFSV 365

Query: 393 FGGLAVDQVINE-IGVLGQNGLTDVSLAMFQMFDSLVFGKVLSVIAVVLVLVFFITSSDS 451
           FG  A++ ++N+ +  L  +   + ++A+F+++D L    ++S + V+L++ FF+TSSDS
Sbjct: 366 FGDTALNAIMNQGVTTLISDVQENEAVALFKLYDLLPGASIMSGLTVLLIITFFVTSSDS 425

Query: 452 GSLVIDSITSGGKLDSPVLQRVFWAVLEGAVAVALLWIGGTEAVQALQAGVISTALPFTV 511
           GSLVIDS+ SGGK +SPV QR+FWA LEG VA  LL  GG   + ALQ   I++ALPF  
Sbjct: 426 GSLVIDSLASGGKEESPVWQRIFWACLEGTVAAVLLLAGG---LNALQTMTIASALPFAF 482

Query: 512 ILLLMCVSLWKGLKTE 527
           I+L     LW+ L  E
Sbjct: 483 IMLASAAGLWRALVIE 498