Pairwise Alignments

Query, 540 a.a., BCCT family transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 656 a.a., High-affinity choline transport protein from Alteromonas macleodii MIT1002

 Score =  426 bits (1096), Expect = e-123
 Identities = 223/496 (44%), Positives = 323/496 (65%), Gaps = 11/496 (2%)

Query: 35  VHNPVFGISAGLIAAFLLLTVLVDAHQAKIGLDTVKQSIIASFDWLFIWSGNLFLLFCVG 94
           ++ PVF  S+ LI   L+         A      ++ +I+ +  W ++++  + ++F V 
Sbjct: 10  LNKPVFITSSALILCLLIFAAGAP-ETADALFQKLQSAIVTNGSWFYVFTVAVIVVFVVF 68

Query: 95  LVISPFGKIRLGGQAAKADHSFLSWLAMLFAAGMGIGLMFWSVAEPVAYYTGWYETPLGV 154
           L +S +G+I+LG   A  + SF +WL+MLFAAGMGIGLMF+ VAEP+ ++      P   
Sbjct: 69  LGMSRYGEIKLGPDHASPEFSFGTWLSMLFAAGMGIGLMFFGVAEPLMHFLA----PPTA 124

Query: 155 EANTPQAAQLAMGATMFHWGLHPWAIYGVVALSLAFFCYNKGLPLSMRSVFYPLLGDRAW 214
           +A +  A + AM  T FHWG+H WAIY VVAL L +F Y + LPL++RS  YPL+GDR +
Sbjct: 125 QAESIDAVREAMKTTFFHWGVHAWAIYAVVALILGYFAYRQNLPLTLRSALYPLIGDRIY 184

Query: 215 GWAGHVVDILAVLATLFGLATSLGLGAQQAASGIHHVFGFESGIGLQIAVICVVTGLATL 274
           GW GHVVDI AV +T+FG++TSLGLGA Q  +G +++FG  S  G+QIA++  V GLA +
Sbjct: 185 GWPGHVVDIFAVTSTVFGVSTSLGLGASQVNAGFNYLFGLPSNTGVQIAIMAGVIGLAVI 244

Query: 275 SVVRGIDGGVKVISNINMIVAFLLLALVAVIGYSV-TLTSIPTTLMAYLQNLIPLS-NPH 332
           SV  G++ G++ +S  NM++A LLL +V  +G +V  L +      AYL +L+  + N  
Sbjct: 245 SVTTGLEKGIRRLSETNMVLALLLLLIVLFLGPTVFLLQAFMQNTGAYLSDLVRNTFNLF 304

Query: 333 GREDEVWFQGWTVFYWAWWISWSPFVGMFIARVSKGRTIREFIVAVLLIPTLVTLVWMSV 392
             E   W  GWT+FYW WW++W+PFVG+FIAR+S GRTIREF++ VLLIP+  TL WM+V
Sbjct: 305 AYEKTDWIGGWTIFYWGWWLAWAPFVGLFIARISYGRTIREFVMGVLLIPSAFTLFWMTV 364

Query: 393 FGGLAVDQV-INEIGVLGQNGLTDVSLAMFQMFDSLVFGKVLSVIAVVLVLVFFITSSDS 451
           FG  A+DQV +    VL Q    D S+A+F   +   F  VLS+IAV++V+VFF+TS DS
Sbjct: 365 FGNAAIDQVLVQGKDVLAQMVNEDSSVALFVFLEQFPFASVLSLIAVLMVIVFFVTSCDS 424

Query: 452 GSLVIDSITSGGKLDSPVLQRVFWAVLEGAVAVALLWIGGTEAVQALQAGVISTALPFTV 511
           G++V+D + S G+ ++P+ QRV+WAV  G V+  LL+ GG   + ALQ   I+ ALPF +
Sbjct: 425 GAMVVDMLCSHGENNTPLWQRVYWAVGVGVVSSVLLYAGG---LGALQTMTIAAALPFAI 481

Query: 512 ILLLMCVSLWKGLKTE 527
           +LL+    L K L+ E
Sbjct: 482 VLLIAIAGLLKALRIE 497