Pairwise Alignments

Query, 427 a.a., C4-dicarboxylate ABC transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 468 a.a., Sialic acid TRAP transporter large permease protein SiaM from Xanthobacter sp. DMC5

 Score =  164 bits (414), Expect = 7e-45
 Identities = 118/443 (26%), Positives = 203/443 (45%), Gaps = 40/443 (9%)

Query: 11  LFALLLGFPVAFTFGGIALIFGLWAEGIEMFAFMPYRIQSIMENTVLMAVPLFVFMGLVL 70
           LF +L G PVA    G +L++ L   G      +  R+ + +E+  L+AVP F+  G ++
Sbjct: 9   LFLMLCGVPVAIAMAGASLVYIL-VSGTVPDVVIAQRMIAGVESFPLLAVPFFILAGNLM 67

Query: 71  QKTKLAEQLLESMGRLFGGIHGGVAISTVLVGTLLAASTGVVGASVVAMGLISLPVMLKY 130
               +  ++      L G + GG+    ++   + +  +G   A    +G I +  M  +
Sbjct: 68  NIAGVTGRIYAFAVALVGWMRGGLGQVNIIGSVIFSGMSGTAIADAAGLGTIEIKAMKDH 127

Query: 131 RYDKGLACGTICASGTLGQIIPPSIVLILLGDVLGVPVGDLFQAALWPGLMLVAAYIIYI 190
            Y    A G   AS TLG IIPPS+  ++ G +  V +G LF   + PG+++    +  +
Sbjct: 128 GYSTEFAVGVTAASATLGPIIPPSLPFVIYGMLANVSIGALFLGGVVPGVVMTLLMMGTV 187

Query: 191 LIYAKLNP-------------------------QAAMPIEPDADLSRRQEVVKALKAVIP 225
             +A  N                           AA+ +  +  LS  Q V+ AL  +I 
Sbjct: 188 AYFAHRNGWGSDAAFNWRQLLSASIEVVIVLAFPAAVYVMIEVGLSTNQAVLIALAVLIA 247

Query: 226 -----------PLALIVVVLGSIFAGVATPTESAALGGAGAILLALA-YGQFSWSMVYDA 273
                       L   V+++G +  G  TPTE+A      ++ L L  Y   +   +  A
Sbjct: 248 LDWYFDFSAVMALMTPVILIGGMTLGWFTPTEAAVAAVIWSLFLGLVRYRSMTLKTLAKA 307

Query: 274 SKETVKVTAMVFAILLGATAFSMAFTYTGGDELVEEWMMNLPGDKWGFLIVTMLVILILG 333
           + +T++ TA V  I+  A+ F+   T +   +++ + ++    +KW FL +  L+IL +G
Sbjct: 308 TFDTIETTASVLFIVTAASIFAWLLTASQAAQMLSDAILGFTQNKWVFLALANLLILFVG 367

Query: 334 FFIDFVEICFIIVPILAPVAVLMDVDMTWFAILIAMNLQTSFLTPPFGFSLFYLKGVAPK 393
            FID +    I+VPIL P+ + + +D   F +++ +NL    L PP G  LF L  VA  
Sbjct: 368 CFIDTIAAITILVPILLPIVLKLGIDPIHFGLIMTLNLMIGLLHPPLGMVLFVLARVARL 427

Query: 394 SV--TTMDIYRGVVPFILIQILV 414
           SV  TTM I   +VP ++  + +
Sbjct: 428 SVERTTMAILPWLVPLMIALLAI 450