Pairwise Alignments

Query, 427 a.a., C4-dicarboxylate ABC transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 425 a.a., TRAP-type C4-dicarboxylate transport system, large permease component from Variovorax sp. SCN45

 Score =  182 bits (461), Expect = 2e-50
 Identities = 120/422 (28%), Positives = 207/422 (49%), Gaps = 11/422 (2%)

Query: 2   IGIVMFFVALFALLLGFPVAFTFGGIALIFGLWAEGIEMFAFMPYRIQSIMENTVLMAVP 61
           + +VM    +    L   VA + G +A I G+      M   +     SI     L A+P
Sbjct: 1   MSVVMVATMVLCFALSISVAVSIG-LASILGIQVTNANMLISVKEMFNSI-NKFPLAAIP 58

Query: 62  LFVFMGLVLQKTKLAEQLLESMGRLFGGIHGGVAISTVLVGTLLAASTGVVGASVVAMGL 121
            F+  G +++   ++ +L+E    + GG+ GG+ ++ VL   + AA +G   A+  A+G 
Sbjct: 59  FFILAGNLMETGGISRRLVEFAKSIVGGVQGGLPMTCVLTCMIFAAVSGSSVATTFAIGA 118

Query: 122 ISLPVMLKYRYDKGLACGTICASGTLGQIIPPSIVLILLGDVLGVPVGDLFQAALWPGLM 181
           I +P ++K+ Y    A      S  LG IIPPSI +IL G    V +G+LF A   PG++
Sbjct: 119 ILIPALIKHGYPTSYAAALQATSAELGVIIPPSIPMILYGVSAEVSIGELFIAGFGPGIL 178

Query: 182 LVAAYIIYILIYAKLNPQAAMPIEPDADLSRRQEVVKALKAVIPPLALIVVVLGSIFAGV 241
           +  A ++++ +Y K             D   R    +AL      L + V++LG I+ GV
Sbjct: 179 ISLALMLFVWVYCKWKGWG------KNDGEGRMPFGRALWQAGWALLMPVIILGGIYGGV 232

Query: 242 ATPTESAALGGAGAILLALA-YGQFSWSMVYDASKETVKVTAMVFAILLGATAFSMAFTY 300
            TPTE++A+    A+++ +  Y +     +Y   +++V  +A++  I+  A  F+   T 
Sbjct: 233 FTPTEASAVAVFYALVVGMVIYREIKLKDLYVILRKSVMSSAVIMFIIANAGLFAFLITR 292

Query: 301 TGGDELVEEWMMNLPGDKWGFLIVTMLVILILGFFIDFVEICFIIVPILAPVAVLMDVDM 360
            G  + +  W+  +      FL+     + ++G FI+      ++ PILAPVAV   +D 
Sbjct: 293 AGVPDAIGHWLQQVLQSPAMFLLGVNAALFVIGMFIETSAAIIVLAPILAPVAVHFGIDP 352

Query: 361 TWFAILIAMNLQTSFLTPPFGFSLFYLKGVAPKSVTTMDIYRGVVPFILIQILVLISLMV 420
             F +++ +NL    +TPPFG +LF    VA  S+    I R +VPF+L+ +  L+ +  
Sbjct: 353 VHFGLIMVVNLALGMITPPFGVNLFAACTVARISLDR--IVRHLVPFVLVIMACLMVITY 410

Query: 421 FP 422
            P
Sbjct: 411 VP 412