Pairwise Alignments

Query, 427 a.a., C4-dicarboxylate ABC transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 612 a.a., TRAP dicarboxylate transporter, DctM subunit, unknown substrate 6 from Variovorax sp. SCN45

 Score =  280 bits (716), Expect = 9e-80
 Identities = 185/515 (35%), Positives = 270/515 (52%), Gaps = 100/515 (19%)

Query: 5   VMFFVALFALLLGFPVAFTFGGIALIFGLWAEGIEM-------FAFMPYRIQSIMENTVL 57
           +MF   +  LLLG+PVAF+ G   L FGL   GIE+        A++P R+  IM N  L
Sbjct: 11  IMFAGLICFLLLGYPVAFSLGACGLFFGL--VGIELGVFQSSVMAWLPQRLIGIMANDTL 68

Query: 58  MAVPLFVFMGLVLQKTKLAEQLLESMGRLFGGIHGGVAISTVLVGTLLAASTGVVGASVV 117
           +AVP F  MGL+L+++ +AE LL+++G++FG + GG+A++ + VG LLAA+TGVV ASV+
Sbjct: 69  LAVPFFTLMGLILERSGMAEDLLDTVGQVFGPMRGGLALAVIFVGALLAATTGVVAASVI 128

Query: 118 AMGLISLPVMLKYRYDKGLACGTICASGTLGQIIPPSIVLILLGDVLGVPVGDLFQAALW 177
           +MGLISLP+ML+Y YD+ L+ G I ASGTL QIIPPS+VLI++ D LG  VGD+++ A  
Sbjct: 129 SMGLISLPIMLRYGYDRRLSSGVIAASGTLAQIIPPSLVLIIMADQLGKSVGDMYKGAFL 188

Query: 178 PGLMLVAAYIIYILIYAKLNPQAAMPIEPDADLSRRQEVVKALKAVIPPLALIVVVL--- 234
           PG ML+  Y++Y++  A   P     + P+A   R         +++   AL  VV    
Sbjct: 189 PGFMLMGLYVVYVVFLAIFRPAQVPALPPEARTFREPNGSGGYTSLVALAALSAVVAVWL 248

Query: 235 ------------GSIFAGVATPTESAALGGAGAILLALAYGQFSWSMVYD-ASKETVKVT 281
                       G     VAT  E   +   G + +AL     +  +  +  S+   +VT
Sbjct: 249 ARNMAAVHTWFQGQEVTSVAT-DEKVVVAMCGGVFVALVIALINKGLKLNLLSRLAERVT 307

Query: 282 ------AMVFAILLGATAFSMAFTYTGG-----DELVEEWM---MNLPGDKWGFLIVTML 327
                  ++  ++LG     +A    GG       L+  W+   M+L   K      T L
Sbjct: 308 FVLIPPLLLIFLVLGTIFLGVATPTEGGAMGALGALIMAWVRRRMSLALLKQALASTTKL 367

Query: 328 ---VILIL-------------------------------GFFI-------------DFVE 340
              V+ IL                               GF I             D+ E
Sbjct: 368 SSFVMFILIGATVFSLVFQAADGPIWVEHLLSSLPGGPVGFLIAVNVLVFFLAFFLDYFE 427

Query: 341 ICFIIVPILAPVAVLMDVDMTWFAILIAMNLQTSFLTPPFGFSLFYLKGVAP-------- 392
           + FI+VP+LAPVA  + +D+ WF +L+A+N+QTSF+ PPFGF+LF+L+ VAP        
Sbjct: 428 LSFIVVPLLAPVAHKLGIDLIWFGVLLAVNMQTSFMHPPFGFALFFLRSVAPDKQYVDRV 487

Query: 393 -----KSVTTMDIYRGVVPFILIQILVLISLMVFP 422
                + VTTM IYRG VPF+LIQ+ ++  L+ FP
Sbjct: 488 TQKVMEPVTTMQIYRGAVPFVLIQLTMVGVLIAFP 522