Pairwise Alignments

Query, 427 a.a., C4-dicarboxylate ABC transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 433 a.a., TRAP dicarboxylate transporter, DctM subunit, unknown substrate 3 from Variovorax sp. SCN45

 Score =  221 bits (564), Expect = 3e-62
 Identities = 132/421 (31%), Positives = 220/421 (52%), Gaps = 9/421 (2%)

Query: 5   VMFFVALFAL-LLGFPVAFTFG--GIALIFGLWAEGIEMFAFMPYRIQSIMENTVLMAVP 61
           V+ FVALF L LL  PV    G  G+     L   G  +       ++++ + T    +P
Sbjct: 8   VLGFVALFVLMLLRVPVGMAMGLVGVTGYSYLVGPGPALKLVGQTSMRTVTDYT-FGVIP 66

Query: 62  LFVFMGLVLQKTKLAEQLLESMGRLFGGIHGGVAISTVLVGTLLAASTGVVGASVVAMGL 121
           +F+ MG ++  + ++ +L ++   + G + GG+ ++TV+     AA  G   A+      
Sbjct: 67  MFMLMGALVSVSGVSRELFKAANSMIGHLRGGLGVATVVACGGFAAICGSSVATAATFSA 126

Query: 122 ISLPVMLKYRYDKGLACGTICASGTLGQIIPPSIVLILLGDVLGVPVGDLFQAALWPGLM 181
           ++ P M ++ Y +  + G I A GTLG I+PPS VL +   +    +G LF A + PG++
Sbjct: 127 VAYPEMRRFNYPQSFSTGVIAAGGTLGAILPPSTVLAVYAILTQQDIGKLFMAGIVPGIL 186

Query: 182 LVAAYIIYILIYAKLNPQAAMPIEPDADLSRRQEVVKALKAVIPPLALIVVVLGSIFAGV 241
            +A Y++ I I  KL P       P  ++    E VK LK V  PL L V V+G ++ G 
Sbjct: 187 AMAMYVMTIAIIVKLRPDWL----PGGEIKPWSERVKDLKNVWAPLVLFVFVIGGLYGGF 242

Query: 242 ATPTESAALGGAGAILLALAYGQFSWSMVYDASKETVKVTAMVFAILLGATAFSMAFTYT 301
            TPTE+  +G +GA +L L   +     + +A     +  A VF +L+GA  F    T T
Sbjct: 243 FTPTEAGGVGASGAFILGLVRRKLDGPKIREALLSATRTAAAVFTVLIGALLFGYFLTIT 302

Query: 302 GGDELVEEWMMNLPGDKWGFLIVTMLVILILGFFIDFVEICFIIVPILAPVAVLMDVDMT 361
              + + E++  L   ++G L + ML+ L+LG  +D + +  + VPI+ PV V +  D  
Sbjct: 303 QSPQKLTEFLTGLGIGRYGVLALIMLMYLVLGCLMDAMAMIILTVPIIYPVIVHLGFDPI 362

Query: 362 WFAILIAMNLQTSFLTPPFGFSLFYLKGVAPKSVTTMDIYRGVVPFILIQILVLISLMVF 421
           WF ++I M ++   + PP G ++F +K V  K V+   I++GV+PFI+  I+ L+ L+ F
Sbjct: 363 WFGVIIVMTVELGLIHPPVGMNVFVIKSVV-KDVSFTTIFKGVLPFIVTDIVRLVILIAF 421

Query: 422 P 422
           P
Sbjct: 422 P 422