Pairwise Alignments

Query, 427 a.a., C4-dicarboxylate ABC transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 425 a.a., TRAP transporter large permease from Variovorax sp. OAS795

 Score =  179 bits (455), Expect = 1e-49
 Identities = 120/420 (28%), Positives = 207/420 (49%), Gaps = 13/420 (3%)

Query: 4   IVMFFVALFALLLGFPVAFTFGGIALIFGLWAEGIEMFAFMPYRIQSIMENTVLMAVPLF 63
           +V   V  FAL +   V+    G+A I G+    + M   +     SI     L A+P F
Sbjct: 5   MVATMVLCFALSVSVAVSI---GLASILGIQVANVNMLISVKEMFNSI-NKFPLAAIPFF 60

Query: 64  VFMGLVLQKTKLAEQLLESMGRLFGGIHGGVAISTVLVGTLLAASTGVVGASVVAMGLIS 123
           +  G +++   ++ +L+E    + GG+ GG+ ++ VL   + AA +G   A+  A+G I 
Sbjct: 61  ILAGNLMETGGISRRLVEFAKSIVGGVQGGLPMTCVLTCMIFAAVSGSSVATTFAIGAIL 120

Query: 124 LPVMLKYRYDKGLACGTICASGTLGQIIPPSIVLILLGDVLGVPVGDLFQAALWPGLMLV 183
           +P ++K+ Y    A      S  LG IIPPSI +IL G    V +G+LF A   PG+++ 
Sbjct: 121 IPALIKHGYPTAYAAALQATSAELGVIIPPSIPMILYGVSAEVSIGELFIAGFGPGILIS 180

Query: 184 AAYIIYILIYAKLNPQAAMPIEPDADLSRRQEVVKALKAVIPPLALIVVVLGSIFAGVAT 243
            A ++++ +Y K             D   R    KA       L + V++LG I+ G+ T
Sbjct: 181 LALMLFVWVYCKWRGWG------KNDGEGRMPFGKAAWQAGWALLMPVIILGGIYGGIFT 234

Query: 244 PTESAALGGAGAILLALA-YGQFSWSMVYDASKETVKVTAMVFAILLGATAFSMAFTYTG 302
           PTE++A+    A+++ +  Y +     +Y   +++V  +A++  I+  A  F+   T  G
Sbjct: 235 PTEASAVAVFYALVVGVVIYREIKPKDLYLILRKSVLSSAVIMFIIANAGLFAFLITRAG 294

Query: 303 GDELVEEWMMNLPGDKWGFLIVTMLVILILGFFIDFVEICFIIVPILAPVAVLMDVDMTW 362
             + +  W+  +      FL+     + I+G FI+      ++ PILAPVAV   +D   
Sbjct: 295 VPDAIGHWLQEVLKSPAMFLLGVNAALFIIGMFIETSAAIIVLAPILAPVAVHFGIDPVH 354

Query: 363 FAILIAMNLQTSFLTPPFGFSLFYLKGVAPKSVTTMDIYRGVVPFILIQILVLISLMVFP 422
           F +++ +NL    +TPPFG +LF    VA  S+  +  Y  +VPF+L+ +  L+ +   P
Sbjct: 355 FGLIMVVNLALGMITPPFGVNLFAACTVARISLDRIVTY--LVPFVLVILACLMVITYVP 412