Pairwise Alignments

Query, 427 a.a., C4-dicarboxylate ABC transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 430 a.a., TRAP-type C4-dicarboxylate transport system, large permease component from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  144 bits (362), Expect = 7e-39
 Identities = 112/428 (26%), Positives = 192/428 (44%), Gaps = 20/428 (4%)

Query: 5   VMFFVALFALLLGFPVAFTFGGIALIFGLWAEGIEMFAFMPYRIQSIMENTVLMAVPLFV 64
           V+    L  LL+G PVAF+ G  ++   L+A       F   ++   M+    MA+P FV
Sbjct: 5   VLSVTFLVLLLIGVPVAFSIGLASVATVLYAGVPVPIVFQ--KMVGGMQVFSFMAIPFFV 62

Query: 65  FMGLVLQKTKLAEQLLESMGRLFGGIHGGVAISTVLVGTLLAASTGVVGASVVAMGLISL 124
           F G ++    +A++++     L G + GG+ +S V+  TL     G   A V AMG + +
Sbjct: 63  FAGELMLYGGIADRIVRFANSLVGHVRGGLGMSNVVGCTLFGGVAGSALADVSAMGSVMI 122

Query: 125 PVMLKYRYDKGLACGTICASGTLGQIIPPSIVLILL----GDVLGVPVGDLFQAALWPGL 180
           P+M K  YD   A      +  +G ++P S  LI+       +  V V +L  AA+ P +
Sbjct: 123 PLMKKEGYDADYAVNVTTHAALVGVLMPTSHNLIIFTLATTGIASVSVLNLILAAIVPAV 182

Query: 181 MLVA---AYIIYILIYAKLNPQAAMPIEPDADLSRRQEVVKALKAVIPPLALIVVVLGSI 237
           +L     A   Y+ +      +   P           EV+ A    +P L ++V++L  I
Sbjct: 183 LLTVCNLAAAYYVAVKRGYPTRGKFP--------GWGEVLSAWLGALPGLLIVVIILVGI 234

Query: 238 FAGVATPTESAALGGAGAILL-ALAYGQFSWSMVYDASKETVKVTAMVFAILLGATAFSM 296
            +GV T  ESAA     A+++  L Y   SW     A  +  K T +V  ++  ++AF  
Sbjct: 235 LSGVFTAAESAATAVLWALVVTVLVYRSLSWKDFLKACAKASKTTGVVLLLIGISSAFGY 294

Query: 297 AFTYTGGDELVEEWMMNLPGDKWGFLIVTMLVILILGFFIDFVEICFIIVPILAPVAVLM 356
                   +   E M ++  + W   ++  +++ ILG F+D      +  PI  P+A+  
Sbjct: 295 FMALYEVPQKTGELMTSVSDNPWVIFLMINILLFILGTFLDMAATILVCTPIFLPIAMHF 354

Query: 357 DVDMTWFAILIAMNLQTSFLTPPFGFSLFYLKGVAPKSVTTMDIYRGVVPFILIQILVLI 416
            +D   F I++ +N      TPP G + F   G A   ++   + R ++PF     + L+
Sbjct: 355 GMDPAQFGIVMLINCALGLNTPPVGVTQFV--GCAIGGISVGQVMRSILPFYGALTVCLM 412

Query: 417 SLMVFPSF 424
            +   P+F
Sbjct: 413 LVTYVPAF 420