Pairwise Alignments

Query, 427 a.a., C4-dicarboxylate ABC transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 434 a.a., TRAP dicarboxylate transporter, DctM subunit, unknown substrate 3 from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  194 bits (494), Expect = 3e-54
 Identities = 119/421 (28%), Positives = 214/421 (50%), Gaps = 10/421 (2%)

Query: 4   IVMFFVALFALLLGFPVAFT-FGGIALIFGLWAEGIEMFAFMPYRIQSIMENTVLMAVPL 62
           +V F   LF + +   +AF  FGG  L+ GL    + M A +      +     L+ +PL
Sbjct: 9   LVAFAFILFQVPIATALAFAGFGGYVLLNGL-TPALSMVATVTKDSTLVYS---LIVLPL 64

Query: 63  FVFMGLVLQKTKLAEQLLESMGRLFGGIHGGVAISTVLVGTLLAASTGVVGASVVAMGLI 122
           FV MG ++    ++  L  +     G   GG+A++TV+      A  G   A+   MG +
Sbjct: 65  FVLMGNLVAGAGISGDLFRAAQAFIGKRRGGLAMATVVACGGFGAICGSSVATAATMGKV 124

Query: 123 SLPVMLKYRYDKGLACGTICASGTLGQIIPPSIVLILLGDVLGVPVGDLFQAALWPGLML 182
           ++P M K  Y   L+   + A GTLG +IPPS+++++ G      +G LF A + PGL+ 
Sbjct: 125 AIPSMRKLGYGDSLSSAAVAAGGTLGILIPPSVIMVVYGVATQTHIGMLFAAGIVPGLIA 184

Query: 183 VAAYIIYILIYAKLNPQAAMPIEPDADLSRRQEVVKALKAVIPPLALIVVVLGSIFAGVA 242
           +  Y+  +       P+ A    P A+ + +   +  L+A+ P   +  VV+G I+ G  
Sbjct: 185 IGGYMAAVKWSVWRKPELA----PLAEDNEQVNKLALLRALWPVALIFGVVMGGIYGGFF 240

Query: 243 TPTESAALGGAGAILLALAYGQFSWSMVYDASKETVKVTAMVFAILLGATAFSMAFTYTG 302
           T  E++ +G A A++ AL +       +Y    +T + +AM+FAI+LGA  F      TG
Sbjct: 241 TSVEASGIGAAAALVFALTHHSLKLKDIYAILVDTARTSAMMFAIVLGAALFGEFVNLTG 300

Query: 303 GDELVEEWMMNLPGDKWGFLIVTMLVILILGFFIDFVEICFIIVPILAPVAVLMDVDMTW 362
             E + + +       +G +++ +++ ++LG  ++ + +  + VPI  P+ + +  D  W
Sbjct: 301 VHEGLLQVVKASGLPPFGIILLMIVLYILLGTVLESLSMILLTVPIFFPIILALGYDPVW 360

Query: 363 FAILIAMNLQTSFLTPPFGFSLFYLKGVAPKSVTTMDIYRGVVPFILIQILVLISLMVFP 422
           F IL+ M ++   +TPP G +LF ++ V P  +  M + RGV+PFI+  +L ++ +   P
Sbjct: 361 FGILVVMVVEIGLITPPIGVNLFVIRSVMP-DIPMMTVVRGVIPFIVADVLRILLIAAVP 419

Query: 423 S 423
           +
Sbjct: 420 A 420