Pairwise Alignments

Query, 427 a.a., C4-dicarboxylate ABC transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 613 a.a., TRAP dicarboxylate transporter, DctM subunit, unknown substrate 6 from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  218 bits (554), Expect = 5e-61
 Identities = 164/514 (31%), Positives = 255/514 (49%), Gaps = 98/514 (19%)

Query: 5   VMFFVALFALLLGFPVAFTFGGIALIFGLWAEGIEM-------FAFMPYRIQSIMENTVL 57
           +MF   +  LLLGFPVAF+ G   L FG+   GIEM        A++P R+  IM N  L
Sbjct: 11  IMFAGLIIFLLLGFPVAFSLGACGLAFGV--VGIEMGVFPSSVLAWLPQRLIGIMANDTL 68

Query: 58  MAVPLFVFMGLVLQKTKLAEQLLESMGRLFGGIHGGVAISTVLVGTLLAASTGVVGASVV 117
           +AVP F  MGL+L+++ +AE LL+++G++FG + GG+A++ V VG +LAA+TGVV ASV+
Sbjct: 69  LAVPFFTLMGLILERSGMAEDLLDTVGQVFGPMRGGLALAVVFVGAMLAATTGVVAASVI 128

Query: 118 AMGLISLPVMLKYRYDKGLACGTICASGTLGQIIPPSIVLILLGDVLGVPVGDLFQAALW 177
           +MGLISLP+ML+Y YD+  + G I ASGTL QIIPPS+VLI++ D LG  VGD+++ A  
Sbjct: 129 SMGLISLPIMLRYGYDRQFSSGVIAASGTLAQIIPPSLVLIIMADQLGRSVGDMYKGAFI 188

Query: 178 PGLMLVAAYIIYILIYAKLNPQAAMPIEPDADLSRRQEVVKALKAVIPPLA---LIVVVL 234
           P  MLV  Y++YI   A   P +   +  +A + R  +     ++++  +    ++ +VL
Sbjct: 189 PAFMLVGCYVLYIACLAIFKPASVPALPTEARIYREPDGSGGYQSLLVLMVISFMVSIVL 248

Query: 235 GSIFAGVAT----------PTES----AALGGA-GAILLALAYGQFSWSMVYDASKET-- 277
                 V T          PT+     A  GGA  A+++ALA       ++   ++    
Sbjct: 249 ARYMPEVHTWWLGHEVTSVPTDEKVVVAMAGGAFVALVMALANKYAKLGLLSRLAERVTF 308

Query: 278 VKVTAMVFAILLGATAFSMAFTYTGGDEL--VEEWMMNLPGDKWGFLIV--TMLVILILG 333
           V +  ++   L+  T F    T T G  +  +   +M L   +    ++   +     LG
Sbjct: 309 VLIPPLLLIFLVLGTIFLGIATPTEGGAMGAMGAIIMALVRKRLDMKLLKQALATTTKLG 368

Query: 334 FFIDFVEICFIIVPILAPVA--------VLMDVDMTWFAILIAMNL------------QT 373
            F+ F+ I   I  ++   A        +L D+       LI +N+            + 
Sbjct: 369 SFVMFILIGATIFGLVFQAADGPIWVEHLLADLPGGAVGFLIVVNILIFFLAFFLDYFEL 428

Query: 374 SFLTPP--------------------------------FGFSLFYLKGVAPKS------- 394
           SF+  P                                FGF+LF+L+ VAP         
Sbjct: 429 SFIVVPLLAPVADKLGIDLIWFGVLLAVNMQTSFMHPPFGFALFFLRSVAPDKPYVDRVT 488

Query: 395 ------VTTMDIYRGVVPFILIQILVLISLMVFP 422
                 VTTM IY+G +PF++IQ+ ++  L+ FP
Sbjct: 489 NKVMAPVTTMQIYKGAIPFLIIQLFMVGVLIAFP 522