Pairwise Alignments

Query, 427 a.a., C4-dicarboxylate ABC transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 654 a.a., TRAP-type C4-dicarboxylate transport system, large permease component from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  179 bits (454), Expect = 2e-49
 Identities = 92/211 (43%), Positives = 141/211 (66%), Gaps = 1/211 (0%)

Query: 213 RQEVVKALKAVIPPLALIVV-VLGSIFAGVATPTESAALGGAGAILLALAYGQFSWSMVY 271
           R E+ K L A   PL L+++ VLGSI  G+ATPTE+AA+G  G +LLA AY + + +++ 
Sbjct: 432 RLEIFKMLLASFFPLVLLILSVLGSIVLGLATPTEAAAMGALGGMLLAAAYRRLNMAVLK 491

Query: 272 DASKETVKVTAMVFAILLGATAFSMAFTYTGGDELVEEWMMNLPGDKWGFLIVTMLVILI 331
           ++   T K +AMV  + +G+  FS AF   GG  LVE+W++++   K  FL++T ++I +
Sbjct: 492 ESVYLTAKTSAMVCWLFVGSAIFSAAFALLGGQALVEQWVLSMELTKIEFLVMTQIIIFL 551

Query: 332 LGFFIDFVEICFIIVPILAPVAVLMDVDMTWFAILIAMNLQTSFLTPPFGFSLFYLKGVA 391
           LG+ +++ EI  I +PI  P+    DVD  +F +L+A+NLQT+FL+PP   + FYLKGVA
Sbjct: 552 LGWPLEWTEIIVIFMPIFIPLLAHFDVDPLFFGLLVALNLQTAFLSPPVAMAAFYLKGVA 611

Query: 392 PKSVTTMDIYRGVVPFILIQILVLISLMVFP 422
           P  VT   I+ G++PF+ IQIL ++ L +FP
Sbjct: 612 PPHVTLNQIFLGMLPFMGIQILAIVLLYMFP 642



 Score =  167 bits (422), Expect = 1e-45
 Identities = 86/209 (41%), Positives = 131/209 (62%), Gaps = 3/209 (1%)

Query: 2   IGIVMFFVALFALLLGFPVAFTFGGIALIFGLWAEGIEMFAFMPYRIQSI---MENTVLM 58
           +G++M  + + A++LGFP AFT  G+ ++F   A   ++   +   +QS    M N VL+
Sbjct: 36  LGLLMLSLVVVAIMLGFPTAFTLMGMGMLFTWLAYERDVTRTLDLMVQSAYKTMANDVLI 95

Query: 59  AVPLFVFMGLVLQKTKLAEQLLESMGRLFGGIHGGVAISTVLVGTLLAASTGVVGASVVA 118
           A+PLFVFMG ++++  L E L +SM      + G +A++T++  T+ A +TG+VGA V  
Sbjct: 96  AIPLFVFMGYLVERANLIESLFKSMHLAMARLPGALAVATLVTCTIFATATGIVGAVVTL 155

Query: 119 MGLISLPVMLKYRYDKGLACGTICASGTLGQIIPPSIVLILLGDVLGVPVGDLFQAALWP 178
           MGL++LP ML+  Y   LA G I A G LG +IPPS++LI+ G   GV V  L+  A +P
Sbjct: 156 MGLLALPAMLRAGYSVPLAAGAITAGGCLGILIPPSVLLIVYGATAGVSVVQLYAGAFFP 215

Query: 179 GLMLVAAYIIYILIYAKLNPQAAMPIEPD 207
           GLML   YI+Y+++ AKL PQ A P+  +
Sbjct: 216 GLMLATLYIVYVIVVAKLKPQWAPPLSAE 244