Pairwise Alignments

Query, 427 a.a., C4-dicarboxylate ABC transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 423 a.a., TRAP-type C4-dicarboxylate transport system, large permease component from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  159 bits (402), Expect = 2e-43
 Identities = 114/415 (27%), Positives = 202/415 (48%), Gaps = 21/415 (5%)

Query: 16  LGFPVAFTFGGIALIFGLWAEGIEMFAFMPYRIQSIMENTVLMAVPLFVFMGLVLQKTKL 75
           LG P AF  G + +I  + + GIE   F P  + +  ++  L+A+P F+  G ++    L
Sbjct: 18  LGMPFAFAIG-LCVIAVVLSVGIEPMLF-PQTVVAGTQSFSLLAIPFFMLAGELMSAGGL 75

Query: 76  AEQLLESMGRLFGGIHGGVAISTVLVGTLLAASTGVVGASVVAMGLISLPVMLKYRYDKG 135
           +++L+         + GG+ ++ VL   + AA +G   A+  A+G + +P M+   YDK 
Sbjct: 76  SQRLVRVAEVFVRHLPGGMDLAVVLAALVFAAVSGSAPATTAAIGAVMIPAMVARGYDKA 135

Query: 136 LACGTICASGTLGQIIPPSIVLILLGDVLGVPVGDLFQAALWPGLMLVAAYIIYILIYAK 195
            A   + ++G L  +IPPSI  ++ G +    +  LF + + PGL++     +  +  A 
Sbjct: 136 YATALVVSAGVLAPLIPPSIAFVIWGVIAEQSISRLFLSGVLPGLLMALGMAVIAVSRAL 195

Query: 196 LNPQAAMPIEPDADLSRRQEVVKALKAVIPPLALIVVVLGSIFAGVATPTESAALGGAGA 255
            +P   +P EP A L   +E+  AL+  +  L   VVVLG I+ G  TPTE+A +    A
Sbjct: 196 RSP---IPREPRASL---REIGTALREGVWALLAPVVVLGGIYGGAFTPTEAAVVACVYA 249

Query: 256 ILLALAY-GQFSWSMVYDASKETVKVTAMVFAILLGATAFSMAFTYTGGDELVEEWMMNL 314
           + + +    +   S +     + + ++A+V AI+  +  FS           +  W+   
Sbjct: 250 LFIGVVVERRLKLSQLPGIISKGMAISAIVMAIVAVSNGFSFLIAQEQLAGKLAAWLALH 309

Query: 315 PGDKWGFLIVTMLVILILGFFI-----DFVEICFIIVPILAPVAVLMDVDMTWFAILIAM 369
             ++W     TML+ L +GFF+     D V I  I+ P+L  +A    VD   F  +I  
Sbjct: 310 FHERW-----TMLLALNVGFFLLAAVMDEVAIMVILGPMLIGIANQFGVDPIHFGAMIVT 364

Query: 370 NLQTSFLTPPFGFSLFYLKGVAPKSVTTMDIYRGVVPFILIQILVLISLMVFPSF 424
           N+      PP G+ LF   G+A   +    + R ++PF+ + ++VL+ +   P+F
Sbjct: 365 NVAIGMAAPPIGYCLFV--GMAVSGLKLWPVARAILPFVAMMLVVLVLVTYVPAF 417