Pairwise Alignments

Query, 427 a.a., C4-dicarboxylate ABC transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 433 a.a., TRAP-type C4-dicarboxylate transport system, large permease component from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  215 bits (548), Expect = 2e-60
 Identities = 131/423 (30%), Positives = 222/423 (52%), Gaps = 9/423 (2%)

Query: 1   MIGIVMFFVALFALLLGFPVAFTFGGIALIFGLWAEG-IEMFAFMPYRIQSIMENTVLMA 59
           +IGI + F+ L A  +  P A    GIA    LW +G +     +       M++  L A
Sbjct: 6   IIGIFVLFIGLLATGMSVPFAILLPGIAY---LWLQGGVGALHGLGLASWGSMDSYTLTA 62

Query: 60  VPLFVFMGLVLQKTKLAEQLLESMGRLFGGIHGGVAISTVLVGTLLAASTGVVGASVVAM 119
           +PLFV M  +LQ + L  ++   + +L   + GG+  + +    + AA +G   A+  ++
Sbjct: 63  IPLFVLMADILQGSGLGLRVYGGLSKLVRRVPGGLLQTNIAGCAVFAAVSGSSVATAASI 122

Query: 120 GLISLPVMLKYRYDKGLACGTICASGTLGQIIPPSIVLILLGDVLGVPVGDLFQAALWPG 179
           G ++LP +   RYD  LA G++ A GTLG +IPPSI +I+        V  LF A + PG
Sbjct: 123 GKVALPELKARRYDARLATGSLAAGGTLGILIPPSIAMIVYATFTETSVAKLFMAGVIPG 182

Query: 180 LMLVAAYIIYILIYAKLNPQAAMPIEPDADLSRRQEVVKALKAVIPPLALIVVVLGSIFA 239
           ++L   ++ Y+   A   P  A     + +   R+ V++AL  ++P + LI+ ++G+I+ 
Sbjct: 183 VVLTLMFMAYLAFAAIRRPGIA---PRETEPLTRETVLRALVDIVPFMLLILGIMGAIYT 239

Query: 240 GVATPTESAALGGAGAILLALAYGQFSWSMVYDASKETVKVTAMVFAILLGATAFSMAFT 299
           GVATPTE+AA G   AI++A  +GQ  W    D  K +  VT+ +  I   A  FS A  
Sbjct: 240 GVATPTEAAAAGCIFAIVIARLFGQLPWREFVDCLKRSTLVTSNILFITYAAFIFSYAMA 299

Query: 300 YTGGDELVEEWMMNLPGDKWGFLIVTMLVILILGFFIDFVEICFIIVPILAPVAVLMDVD 359
             G  E +  +++ L   K  FL+   ++   LG  ++ + +  I VP+L P+     +D
Sbjct: 300 VAGVGEDITAFIVGLNLSKMEFLLALFILFTALGALVESLGMIVITVPLLYPLLAPYGID 359

Query: 360 MTWFAILIAMNLQTSFLTPPFGFSLFYLKGVAPKSVTTMDIYRGVVPFILIQILVLISLM 419
             WF I++ + ++   +TPP G +LF ++ +A  +++  D+  G +PF LI  L++  L+
Sbjct: 360 PVWFGIVVVVFIEMGQITPPIGINLFVIQSIARGNLS--DVVMGTIPFHLIMFLLVALLI 417

Query: 420 VFP 422
           V P
Sbjct: 418 VLP 420