Pairwise Alignments

Query, 427 a.a., C4-dicarboxylate ABC transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 425 a.a., TRAP-type C4-dicarboxylate transport system, large permease component from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  167 bits (422), Expect = 7e-46
 Identities = 108/415 (26%), Positives = 199/415 (47%), Gaps = 16/415 (3%)

Query: 13  ALLLGFPVAFTF---GGIALIFGLWAEGIEMFAFMPYRIQSIMENTVLMAVPLFVFMGLV 69
           A+ +G P+AF     G   +IF     G      +  +I    ++  L+A+P F+  G +
Sbjct: 13  AMAIGMPIAFALLVTGAALMIFS----GEFDATLLSQKIVEGADSFPLLAIPFFMLAGEL 68

Query: 70  LQKTKLAEQLLESMGRLFGGIHGGVAISTVLVGTLLAASTGVVGASVVAMGLISLPVMLK 129
           +    ++ ++++      G I GG+ I  +    ++AA +G   A   A+  + +P+M K
Sbjct: 69  MNAGGISRRIVDFALAWIGHIRGGLGIVAIAAAVIMAAISGSAAADAAALTAMLIPMMRK 128

Query: 130 YRYDKGLACGTICASGTLGQIIPPSIVLILLGDVLGVPVGDLFQAALWPGLMLVAAYIIY 189
             YD   + G I A   +  ++PPSI LI+ G +  V +G LF AA+ PGL++  A +  
Sbjct: 129 AGYDVARSGGLIAAGSVIAPVLPPSIALIVFGVIANVSIGKLFMAAIVPGLLMGVALVAT 188

Query: 190 ILIYAKLNPQAAMPIEPDADLSRRQEVVKALKAVIPPLALIVVVLGSIFAGVATPTESAA 249
            L  ++  P    P  P  +  R +   +A  A+I P+ ++    G +  GV TPTE+A 
Sbjct: 189 WLWISRKEPGRMQPRTPMPE--RLRITARATWALIMPIGIV----GGMKLGVFTPTEAAV 242

Query: 250 LGGAGAILLAL-AYGQFSWSMVYDASKETVKVTAMVFAILLGATAFSMAFTYTGGDELVE 308
           +    A ++ +  Y + +W M+Y     + K +A V  ++  A   +   T +   + V 
Sbjct: 243 VAAVYAFIVGMFVYRELTWRMLYPLLLSSAKASAAVVFLIATALVSAWLITVSEIPQQVS 302

Query: 309 EWMMNLPGDKWGFLIVTMLVILILGFFIDFVEICFIIVPILAPVAVLMDVDMTWFAILIA 368
           + +  L  +    +   M +++++G  +DF     I+ PIL P+     +D  +F +L  
Sbjct: 303 DMLQPLIANPTLLMFAMMALVIVVGTALDFSPTLLILTPILMPIVREAGIDPVYFGVLFV 362

Query: 369 MNLQTSFLTPPFGFSLFYLKGVAPKSVTTMDIYRGVVPFILIQILVLISLMVFPS 423
           MN     +TPP G  L  +   A   +    + +G+ PF++ ++ VL  L++FPS
Sbjct: 363 MNNAIGLITPPVGIVLNVVCSGA--RLQMGQLMKGLWPFLIAEVAVLFLLVIFPS 415