Pairwise Alignments

Query, 427 a.a., C4-dicarboxylate ABC transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 442 a.a., TRAP transporter large permease from Magnetospirillum magneticum AMB-1

 Score =  180 bits (457), Expect = 7e-50
 Identities = 120/432 (27%), Positives = 208/432 (48%), Gaps = 17/432 (3%)

Query: 2   IGIVMFFVALFALL----LGFPVAFTFGGIALIFGLWAEGIEMFAFMPYRIQSIMENTVL 57
           +G+  F + L  L+    +G  +     GI L+         +F  +   + + + N  L
Sbjct: 6   LGLTAFGILLLMLVVRIHIGIAMFLAATGIYLVLNHGELNSLLFT-LNNLVYARLSNYDL 64

Query: 58  MAVPLFVFMGLVLQKTKLAEQLLESMGRLFGGIHGGVAISTVLVGTLLAASTGVVGASVV 117
             +PLF+ MG       L++ L  + G L G   GG+A +         A  G   A+  
Sbjct: 65  AVIPLFILMGQFATHGGLSKALFHAAGTLIGHFKGGLAYAATAACAAFGAICGSSLATAA 124

Query: 118 AMGLISLPVMLKYRYDKGLACGTICASGTLGQIIPPSIVLILLGDVLGVPVGDLFQAALW 177
            MG ++LP + +  Y   LA GT+ A GTLG +IPPS+ L++   +    +G LF AA+ 
Sbjct: 125 TMGQVALPELTRRNYSGRLATGTLAAGGTLGILIPPSVPLVVYAVLTQESIGKLFVAAVI 184

Query: 178 PGLMLVAAYIIYILIYAKLNPQAAMPIEPDADLSRRQEVVKALKAVIPPLALIVVVLGSI 237
           PG++    Y+  I I   L+P+A     P ++    +E++KA   +IP L + +VV+  I
Sbjct: 185 PGIIAALGYMAVIRIIVSLDPKAG----PASERVSLKEMIKAQLGIIPVLLVFLVVIVGI 240

Query: 238 FAGVATPTESAALGGAGAILLALAYGQFSWSMVYDASKETVKVTAMVFAILLGATAFSMA 297
           + G A PTE+A++G A   ++A+  G   +  +  +   T   TAM+F +L+GA   + A
Sbjct: 241 YGGWANPTEAASIGAAACGIIAVVSGGMRFKDLKQSVFGTAIATAMIFMVLIGADLLNSA 300

Query: 298 FTYTGGDELVEEWMMNLPGDKWGFLIVTMLVILILGFFIDFVEICFIIVPILAPVAVLMD 357
              T     +  W+ N        L   + + ++LG  +D + +  + +PI  PV + +D
Sbjct: 301 LALTQMPAELANWVKNSGMPPVAVLFTIIAIYVLLGCVMDSLAMILLTIPIFYPVVLGLD 360

Query: 358 -----VD--MTWFAILIAMNLQTSFLTPPFGFSLFYLKGVAPKSVTTMDIYRGVVPFILI 410
                VD    WF I+  M ++   + PP G +L+ +  +A K V   +   GV+PF+  
Sbjct: 361 FYGMSVDDKSIWFGIVALMVVEIGLVHPPVGMNLYVINKIA-KDVPLKETAMGVLPFLAS 419

Query: 411 QILVLISLMVFP 422
             + ++ L+ FP
Sbjct: 420 DFIRIVVLVFFP 431