Pairwise Alignments

Query, 427 a.a., C4-dicarboxylate ABC transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 431 a.a., Neu5Ac permease from Alteromonas macleodii MIT1002

 Score =  171 bits (433), Expect = 4e-47
 Identities = 114/419 (27%), Positives = 207/419 (49%), Gaps = 11/419 (2%)

Query: 1   MIGIVMFFVALFALLLGFPVAFTFGGIALIFGLWAEGIEMFAF-MPYRIQSIMENTVLMA 59
           + GI++       LLL  P++ + G   L+  + +  I      +  R+   + +  L+A
Sbjct: 3   LTGIILVVTFFVLLLLNVPISISIGVATLLAMVMSMDIAPATITIAQRMAGGLNSFALLA 62

Query: 60  VPLFVFMGLVLQKTKLAEQLLESMGRLFGGIHGGVAISTVLVGTLLAASTGVVGASVVAM 119
           +P FV  GL++ +  +A++L+E    L G + GG+A+  V+   L  A +G   A+  A+
Sbjct: 63  IPFFVLSGLIMGRGGIAKRLIECAMALIGALPGGLALVNVVSCMLFGAISGSAVATTSAI 122

Query: 120 GLISLPVMLKYRYDKGLACGTICASGTLGQIIPPSIVLILLGDVL-GVPVGDLFQAALWP 178
           G   LP M K  Y+   +     A+ T G +IPPS +LI+      GV +  LF A   P
Sbjct: 123 GSFMLPEMKKAGYEPNFSAAVTAAASTTGMLIPPSNILIVYAIASGGVSIAALFMAGYIP 182

Query: 179 GLMLVAAYIIYILIYAKLNPQAAMPIEPDADLSRRQEVVKALKAVIPPLALIVVVLGSIF 238
           G+M+  A ++   IYAK+      P+ P   +   + VV+   A +P L LI +V+G I 
Sbjct: 183 GIMVGLALMLVCFIYAKMK---GYPLSPRLPI---KVVVEKTIAALPSLFLIFLVIGGIV 236

Query: 239 AGVATPTESAALGGAGAILLALA-YGQFSWSMVYDASKETVKVTAMVFAILLGATAFSMA 297
            GV T TE+ A+    ++LLA+  Y +     + D   +  + TA+V  ++  +TA S  
Sbjct: 237 GGVFTATEAGAIAVVYSLLLAVVFYKEVDAKALPDIFLKAAETTAIVMLLIAASTAMSWL 296

Query: 298 FTYTGGDELVEEWMMNLPGDKWGFLIVTMLVILILGFFIDFVEICFIIVPILAPVAVLMD 357
            ++    + +   ++++  +    L++  L+++++G F+D      I  PI  PVA+ + 
Sbjct: 297 LSFENIPQTLSNALLSISDNPLLILLLINLLLIVVGAFLDMTPAVLIFTPIFLPVALELG 356

Query: 358 VDMTWFAILIAMNLQTSFLTPPFGFSLFYLKGVAPKSVTTMDIYRGVVPFILIQILVLI 416
           +    F I++ +NL     +PP G  LF    +A   +   +I R ++P  +   +VL+
Sbjct: 357 MSELQFGIMLVLNLSIGLCSPPVGAVLFITCAIAKTKLE--NIIRPLIPLYVAMFVVLM 413



 Score = 25.0 bits (53), Expect = 0.005
 Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 16/99 (16%)

Query: 1   MIGIVMFFVALFALLLGFPVAFTFG------GIALIF----GLWAEGIEMFAFMPYRI-Q 49
           M   V+ F  +F      PVA   G      GI L+     GL +  +    F+   I +
Sbjct: 337 MTPAVLIFTPIF-----LPVALELGMSELQFGIMLVLNLSIGLCSPPVGAVLFITCAIAK 391

Query: 50  SIMENTVLMAVPLFVFMGLVLQKTKLAEQLLESMGRLFG 88
           + +EN +   +PL+V M +VL          E++ R  G
Sbjct: 392 TKLENIIRPLIPLYVAMFVVLMLVTYVAWFSEALPRALG 430