Pairwise Alignments

Query, 372 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 322 a.a., TRAP-type C4-dicarboxylate transport system, periplasmic component from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score = 53.1 bits (126), Expect = 1e-11
 Identities = 66/296 (22%), Positives = 129/296 (43%), Gaps = 20/296 (6%)

Query: 20  MKRSVLLIAAGVALLTTSAFAEEKVYRLTLAETWGPNFPIFGDTTKNMAAMAEKMSNGRL 79
           ++R +  +A G+  L+T A AE +   +  ++    ++P      ++M+ + ++ S G+ 
Sbjct: 3   LQRHLFALAVGLLALSTQA-AELRSADVHNSD----DYPTVA-AVRHMSQLLDQRSGGKY 56

Query: 80  QIRIDSANKHKAPLGVFDMVKSGQYDMGHSASYYWKGKVPNTLYFTSMPFGMTTGEQYAW 139
           +I++ + +   +     D VK G  DM            P +L  T MPF   + E    
Sbjct: 57  KIKVFNKSALGSEKETLDQVKIGALDMNRVNISSLNAICPKSLVPT-MPFLFRSTEHMRA 115

Query: 140 FYHGGGMELMEKVYSPHNMLSFPGGNTDVQMGGWFQKEINSVEDLQGLKMRIP--GFAGE 197
              G   E + K      ++     ++  +   + +K + S+ D++G+K+R+        
Sbjct: 116 VLDGPIGEEILKGCEHQGLVGLAFYDSGAR-SIYAKKPVRSLADVKGMKIRVQQSDLWVA 174

Query: 198 VLAELGAKPTNIAPGELYTSLERRTIDALEWVGPSLDLRMGFHKIAPYYYTGWHEPATEL 257
           V   +GA  T +A  E+YT L+   IDA E   PS +    +  +  Y YT  H  A E+
Sbjct: 175 VATAMGANATPMATAEVYTGLKTGVIDAAENNEPSYEGFKHYEAVKVYSYT-QHSMAPEM 233

Query: 258 QFLVNQKTWDKLPEDLREILRVAMRTAAYDMYVQSVHESGKNWVSITQEFPDVKVK 313
             ++++  +DK+    + + R A +        +SV    + W   T +  D+  K
Sbjct: 234 -LVISKAVFDKMSPADQALFRAAAK--------ESVTFQRQKWDEQTAKAIDIVTK 280