Pairwise Alignments

Query, 372 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 360 a.a., TRAP transporter solute receptor, unknown substrate 6 from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  203 bits (516), Expect = 7e-57
 Identities = 114/340 (33%), Positives = 188/340 (55%), Gaps = 10/340 (2%)

Query: 26  LIAAGVALLTTSAFAEEKVYRLTLAETWGPNFPIFGDTTKNMAAMAEKMSNGRLQIRIDS 85
           ++AAGVA     A   +   R  LA ++  +      + + MA   + +S G+ +I +  
Sbjct: 15  VLAAGVA----PAVHAQAAVRWRLASSFPRSLDTIFGSAEKMAQTVKALSGGKFEISVHP 70

Query: 86  ANKHKAPLGVFDMVKSGQYDMGHSASYYWKGKVPNTLYFTSMPFGMTTGEQYAWFYHGGG 145
           A +     GV D ++    DM  +A+YY+ GK P+  +  ++PFG+T  +  +W  HG G
Sbjct: 71  AGELMPAFGVVDALQGDNIDMAQTAAYYFTGKDPSFAFSCAVPFGLTARQNTSWKLHGNG 130

Query: 146 MELMEKVYSPHNMLSFPGGNTDVQMGGWFQKEINSVEDLQGLKMRI-PGFAGEVLAELGA 204
            +LM++ ++ +N  +   GNT  QMGGW++KEI +V DL+GLKMR+  G  GE +A+LG 
Sbjct: 131 GKLMDEFFAQYNFRTASAGNTTTQMGGWYRKEIKTVADLKGLKMRMGGGVFGEGMAKLGV 190

Query: 205 KPTNIAPGELYTSLERRTIDALEWVGPSLDLRMGFHKIAP-YYYTGWHEPATELQFLVNQ 263
              N+  GE+Y +LE+ T+DA E+  P  D ++GFHK+AP YYY GW E   +L+F +N 
Sbjct: 191 VSQNLPAGEIYQALEKGTLDAAEFTVPHDDAKLGFHKVAPYYYYPGWWEGGADLEFFINL 250

Query: 264 KTWDKLPEDLREILRVAMRTAAYDMYVQSVHESGKNWVSITQEFPD-VKVKTFPAPVIKA 322
           K ++ L ++ + IL  AM  AA DM   +      N +++ +   +  ++K FP  VI A
Sbjct: 251 KKFNALSDENKAILNAAMAVAATDM---TAKYDALNPIALKKLVAEKTQLKAFPKAVIDA 307

Query: 323 LREVNDRLLAKHAAEDPLAKEIQESQANYLKQTRSWTDIS 362
             +    + A+H A+ P  K+I +   ++ +    W   S
Sbjct: 308 GFKACMEVFAEHEAKSPTFKKIHQDMRSFQRDQILWNRFS 347