Pairwise Alignments

Query, 372 a.a., ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 364 a.a., TRAP transporter solute receptor, unknown substrate 6 from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  184 bits (468), Expect = 3e-51
 Identities = 108/360 (30%), Positives = 193/360 (53%), Gaps = 18/360 (5%)

Query: 20  MKRSVLLIAAGV----ALLTTSAFAEEKVYRLTLAETWGPNFPIFGDT----TKNMAAMA 71
           M R    + AGV    A++   A A++     ++   W  ++P    T    T+  A   
Sbjct: 1   MDRRKFAVTAGVGAAGAVMGAPAIAQQNP---SVKWRWVSSYPKTLATSYPMTQAFAQRV 57

Query: 72  EKMSNGRLQIRIDSANKHKAPLGVFDMVKSGQYDMGHSASYYWKGKVPNTLYFTSMPFGM 131
            ++++G+ QI++    +  APL V D V+SG  + G +A++++ GK P   + +++PFG+
Sbjct: 58  SELTDGKFQIQLFGPGEIVAPLAVLDAVQSGAVEAGFTATFFYYGKDPTFAFGSAIPFGL 117

Query: 132 TTGEQYAWFYHGGGMELMEKVYSPHNMLSFPGGNTDVQMGGWFQKEINSVEDLQGLKMRI 191
            T +  AW Y GGG++L+ + ++ + +   P G T  QMGGW++KEI +V+DL+GLKMRI
Sbjct: 118 NTRQHAAWMYAGGGLDLLNQFHANYGVHYVPMGFTGAQMGGWYRKEIKTVKDLEGLKMRI 177

Query: 192 PGFAGEVLAELGAKPTNIAPGELYTSLERRTIDALEWVGPSLDLRMGFHKIAP-YYYTGW 250
            G  G+V+  LG  P  +  G++Y +LER  +DA E+  P  D  +G HK+A  YYY GW
Sbjct: 178 SGIGGQVMQRLGVTPQQLPAGDVYAALERGLLDAAEYTNPIDDELLGMHKVAKYYYYPGW 237

Query: 251 HEPATELQFLVNQKTWDKLPEDLREILRVAMRTAAYDMYVQSVHE-SGKNWVSITQEFP- 308
            E + ++   +NQ+ W +LPE      ++A++  A +     ++    KN  ++ +    
Sbjct: 238 WEGSVQVGHFINQQKWAELPER----YKIAVQAVAREQEQAIINNYDAKNAAALKRLIAL 293

Query: 309 DVKVKTFPAPVIKALREVNDRLLAKHAAEDPLAKEIQESQANYLKQTRSWTDISLRAYLN 368
            V +KTFP  V+ A  +     + + A+++   K++ +    +      W  ++  +Y N
Sbjct: 294 GVNIKTFPREVMSAGYKATFEHMDELASKNANFKKVMDHYMAFRADALLWFRVAESSYDN 353