Pairwise Alignments

Query, 524 a.a., murein L,D-transpeptidase from Vibrio cholerae E7946 ATCC 55056

Subject, 560 a.a., L,D-transpeptidase family protein from Rhodanobacter sp000427505 FW510-R12

 Score =  194 bits (492), Expect = 9e-54
 Identities = 144/420 (34%), Positives = 211/420 (50%), Gaps = 29/420 (6%)

Query: 103 EYDVLATDTLLQYLSYAEQAPKVGIA-----WFFEG-QLDQPLAPPSEEAQLALHMAIGN 156
           ++D+LATD  L  L +  +  KV  A     W F+  QLDQ           A+  A+  
Sbjct: 133 QFDLLATDACLGALLHLYRG-KVDPATLDTHWNFDPRQLDQA------RGLKAVRDALAQ 185

Query: 157 QSLARLMDEYTPQDPAYQQLLQAYQSLSSIEFNEVALYEQMERLKRPGDPLSHREALVQR 216
            ++  L     PQ P Y QL  A   L  +               +PG   +   AL QR
Sbjct: 186 GTVGELFARARPQHPLYGQLRTALAKLREVAAQGGWPAIADGATLKPGTHDARVPALRQR 245

Query: 217 LALVNLDTTSILNDVAYYDASLEKPIKQFQKMHGLQTDGVIGPQTMKWLNTSVTERLALL 276
           L LV     + ++D+  YD +LE  +KQFQ+   L  DG +G  T+  LN  V  R+  L
Sbjct: 246 LQLVGYAVGAGVDDL--YDPTLEAALKQFQREQYLTPDGHLGKATLAALNVPVAARIDQL 303

Query: 277 ALNAERIRLWPTQ-QDSMIVVNVPGFDMKYWDAGREVFESKVVVGKTTRPTPVMNTKLDS 335
            +N ER R    Q Q   +VV++ G+ + Y+  G+ V+ S+V VGK  R TPV  +K+  
Sbjct: 304 RVNLERARWLLYQLQGDFVVVDIAGYQVAYYKDGKPVWRSRVQVGKPYRSTPVFKSKITY 363

Query: 336 LIINPTWNVPHKIMVEDILPMVKRDSEYLANHHMEIIRGWSDPEVIDPALIDWEAVEPET 395
           L +NPTW VP  I+  DILP V+++  YLA + + ++   +    + P+ +DW    P  
Sbjct: 364 LTLNPTWTVPPTILKNDILPKVRKNRGYLAANRIRVLD--NQGRELSPSSVDW--ANPRG 419

Query: 396 FPYRLRQQAGVQNALGTYKFNTPNSRAIYLHDTPSKHLFNNASRAFSSGCIRVENAEKFA 455
               LRQ AG  N+LG      PN  A+Y+HDTP + LF N  R FSSGCIRVE   + A
Sbjct: 420 IV--LRQDAGPGNSLGRLVIRFPNDYAVYMHDTPHQELFANERRTFSSGCIRVERPRELA 477

Query: 456 QTLLANQ----GITLDDF--PVSTQAIALKKRIPVHIIYQTV-WYEEGVLHYRDDIYHYD 508
           + LL +Q      ++D     + TQ + L+K + + + Y TV   E+G + +R D+Y  D
Sbjct: 478 ELLLDDQQRWDRASIDGAIDTLKTQTVMLRKPVTLLLAYWTVDLREDGRVGFRPDVYDRD 537