Pairwise Alignments

Query, 524 a.a., murein L,D-transpeptidase from Vibrio cholerae E7946 ATCC 55056

Subject, 666 a.a., hypothetical protein from Xanthobacter sp. DMC5

 Score =  165 bits (418), Expect = 4e-45
 Identities = 101/295 (34%), Positives = 151/295 (51%), Gaps = 35/295 (11%)

Query: 230 DVAYYDASLEKPIKQFQKMHGLQTDGVIGPQTMKWLNTSVTERLALLA----LNAERIRL 285
           D   YD +L + +K FQ+   ++  G+IGP T+  LN   T     L      N ER R 
Sbjct: 365 DDLVYDPALVEAVKAFQEASKIKPTGIIGPATLAALNVGATSGGGSLRNDVIANMERWRW 424

Query: 286 WPTQQ-DSMIVVNVPGFDMKYWDAGREVFESKVVVGKTTRPTPVMNTKLDSLIINPTWNV 344
            P    +  ++VN+P F ++    GR + E++VVVGK   PTP++   +  +++NP WN+
Sbjct: 425 LPRDLGEKYVMVNIPEFMVRINQDGRVIHETRVVVGKPETPTPLLTRDMQYIVVNPAWNI 484

Query: 345 PHKIMVEDILPMVKRDSEYLANHHMEIIRGWSDPEVIDPALIDWEAVEPETFPYRLRQQA 404
           P  I   +++P+++ D   LA   ++++R  S                     Y  RQ  
Sbjct: 485 PPSIARNEMMPLLRSDPSALARRGIQVVRNGSGG-------------------YSFRQDP 525

Query: 405 GVQNALGTYKFNTPNSRAIYLHDTPSKHLFNNASRAFSSGCIRVENAEKFAQTLLANQGI 464
           G +NALG  KF  PN  ++YLHDTPSK LF N  RA+S GC+RV    KF + +  N G+
Sbjct: 526 GERNALGRIKFMFPNDHSVYLHDTPSKALFQNDRRAYSHGCVRVYEPLKFGEVIF-NMGL 584

Query: 465 TLDD---------FPVSTQAIALKKRIPVHIIYQTVWYEE-GVLHYRDDIYHYDA 509
             D          F  S + I LK+R PVHI+Y T + +  G L  R+D+Y  +A
Sbjct: 585 PGDTWSEQRISKMFGGSERYINLKQRFPVHIVYFTAFVDSAGRLVMREDLYGINA 639