Pairwise Alignments

Query, 524 a.a., murein L,D-transpeptidase from Vibrio cholerae E7946 ATCC 55056

Subject, 481 a.a., peptidoglycan binding domain-containing protein from Sphingobium sp. HT1-2

 Score =  142 bits (359), Expect = 2e-38
 Identities = 114/388 (29%), Positives = 177/388 (45%), Gaps = 41/388 (10%)

Query: 139 LAPPSEEAQLALHMAIGNQSLARLMDEYTPQDPAYQQLLQAYQSLSSIEFNEVALYEQME 198
           L  P  + +  L  A+ +  L   +D   PQ+  Y+ L +AY +L     +         
Sbjct: 108 LGAPXXDLERGLKDALASGKLRGWLDGLAPQEEDYRNLSRAYLALGKRGSDSAKPIPDAG 167

Query: 199 RLKRPGDPLSHREALVQRLALVN-LDTTSILNDVAYYDASLEKPIKQFQKMHGLQTDGVI 257
           +   PG       A+ ++L     LD      D   Y A L + +K  Q  +G++ DGVI
Sbjct: 168 KPIDPGTSDXRMPAIERQLVASGYLDRAGNAGD--RYAAPLVRAVKHMQVDYGIKPDGVI 225

Query: 258 GPQTMKWLNTSVTERLALLALNAERIR-LWPTQQDSMIVVNVPGFDMKYWDAGREVFESK 316
           G + ++ LN S  +R   +A+  ER+R L      + I VN+    + YW  G+     K
Sbjct: 226 GEKALEILNLSDADRAREIAVAMERMRWLDRAPXGTRIDVNLAAARLTYWRDGKIADTRK 285

Query: 317 VVVGKTTRPTPVMNTKLDSLIINPTWNVPHKIMVEDILPMVKRDSEYLANHHMEIIRGWS 376
           VVVG+    TP + + +  L+ NPTW VP  I  ++I     +   Y+  ++M    GW 
Sbjct: 286 VVVGEPDTETPQLGSPIYRLVANPTWTVPRSIQNKEI---AGKGXXYMKRNNMVWKDGW- 341

Query: 377 DPEVIDPALIDWEAVEPETFPYRLRQQAGVQNALGTYKFNTPNSRAIYLHDTPSKHLFNN 436
                                  + QQ G +N+LG  KF+  N   IYLHDTP+K LF  
Sbjct: 342 -----------------------IVQQPGPENSLGLVKFDMKNDHEIYLHDTPAKQLFAE 378

Query: 437 ASRAFSSGCIRVENAEKFAQTLLANQGITLDDFPVSTQA-----IALKKRIPVHIIYQTV 491
             R  S GC+RV++A  FA+ +  ++GI LD +  +        + L + IPV + Y T+
Sbjct: 379 VQRQRSHGCVRVDDAVGFAEKIARDEGI-LDQWNKARAXGKEGFVXLPREIPVRLFYSTI 437

Query: 492 WY-EEGVLHYRDDIYHYD---ALALGNG 515
            + +EG    R D Y ++   A ALG G
Sbjct: 438 LFDDEGAPVIRADPYGWNDRVAGALGFG 465