Pairwise Alignments

Query, 524 a.a., murein L,D-transpeptidase from Vibrio cholerae E7946 ATCC 55056

Subject, 405 a.a., hypothetical protein from Sphingobium sp. HT1-2

 Score =  114 bits (285), Expect = 7e-30
 Identities = 86/255 (33%), Positives = 116/255 (45%), Gaps = 35/255 (13%)

Query: 272 RLALLALNAERIRLWPTQQDSM-IVVNVPGFDMKYWDAGREVFESKVVVGKTTRPTPVMN 330
           R A+LA N +R R  P Q  +  ++VN   F+   W+ G+     +VVVGKT  PTPV  
Sbjct: 151 RRAILAANLDRWRWMPRQLGARYLLVNTAAFEASLWEDGKLAGRWRVVVGKTGSPTPVFQ 210

Query: 331 TKLDSLIINPTWNVPHKIMVEDILPMVKRDSEYLANHHMEIIRGWSDPEVIDPALIDWEA 390
            ++  +I NP W +P  I  E I  +V  +    A        G                
Sbjct: 211 ARVTGVIFNPWWEIPPSIAAEGIARLVAHNPAEAARRGYVRENG---------------- 254

Query: 391 VEPETFPYRLRQQAGVQNALGTYKFNTPNSRAIYLHDTPSKHLFNNASRAFSSGCIRVEN 450
                   R RQ+ G QNALG  K   PN   +YLHDTP++ LF    RA+S GC+RV +
Sbjct: 255 --------RYRQRPGPQNALGRMKLVMPNRFNVYLHDTPAQALFEKEVRAYSHGCVRVGD 306

Query: 451 AEKFAQTLLAN--QGITLDDFPVS--TQAIALKKRIPVHIIYQTVWYEE-GVLHYRDDIY 505
           A   A TLL        +D    S  TQ+  L   +PV+I Y T   +  G + Y  DIY
Sbjct: 307 ALGLAATLLGPGWDRARVDTVVGSGRTQSAMLPAALPVYITYFTAEPDSLGGVRYFPDIY 366

Query: 506 HYDALALGNGDASPN 520
             D      G A+P+
Sbjct: 367 RRD-----RGAATPD 376