Pairwise Alignments

Query, 524 a.a., murein L,D-transpeptidase from Vibrio cholerae E7946 ATCC 55056

Subject, 486 a.a., hypothetical protein from Sphingobium sp. HT1-2

 Score =  122 bits (305), Expect = 4e-32
 Identities = 83/289 (28%), Positives = 143/289 (49%), Gaps = 31/289 (10%)

Query: 238 LEKPIKQFQKMHGLQTDGVIGPQTMKWLNTSVTERLALLALNAERIRLWPTQQD-SMIVV 296
           L   +++ Q+ +GL   G++  +T+  LN SV +R+A +  N ER R  P +   + + V
Sbjct: 203 LTAALQRAQRRYGLNPTGLLDARTLTALNVSVDDRIAAIMANMERWRWMPRELPVNRVQV 262

Query: 297 NVPGFDMKYWDAGREVFESKVVVGKTTRPTPVMNTKLDSLIINPTWNVPHKIMVEDILPM 356
           N+    +  +     V   + V G  T  TP++++ + S+++NP WNVP  I  +++ P 
Sbjct: 263 NIAAAVLTVFQGDEPVTSMRAVTGSPTNQTPMLSSNIHSIVVNPPWNVPMSIARKELFP- 321

Query: 357 VKRDSEYLANHHMEIIRGWSDPEVIDPALIDWEAVEPETFPYRLRQQAGVQNALGTYKFN 416
             +    LA    +I++     E                   R+ Q AG  +ALG  KF+
Sbjct: 322 --KGRATLAKQGYKIVKTPEGGE-------------------RIVQPAGPNSALGRLKFD 360

Query: 417 TPNSRAIYLHDTPSKHLFNNASRAFSSGCIRVENAEKFAQTLLAN------QGITLDDFP 470
             N  A+YLHDTPS+  F++  R  S GCIR+E     A+ ++A+      Q  +L D  
Sbjct: 361 FNNPFAVYLHDTPSRGKFSSYDRLASHGCIRLEKPVSLAELMVASDPSLSGQIQSLID-T 419

Query: 471 VSTQAIALKKRIPVHIIYQTVW-YEEGVLHYRDDIYHYDALALGNGDAS 518
             TQ ++L  ++ V+++Y T +    G +++R D Y +D L     +AS
Sbjct: 420 NKTQRVSLPSQVAVYLLYWTAFASSNGTMNFRADPYDWDKLLAQKIEAS 468