Pairwise Alignments

Query, 524 a.a., murein L,D-transpeptidase from Vibrio cholerae E7946 ATCC 55056

Subject, 497 a.a., hypothetical protein from Sphingobium sp. HT1-2

 Score =  156 bits (395), Expect = 1e-42
 Identities = 133/462 (28%), Positives = 197/462 (42%), Gaps = 28/462 (6%)

Query: 59  LWSDLAT--ANHFEAQLEVIHRASFSPLFSRQLFA---LKSYRQQDRWHE------YDVL 107
           LWSD     A   +A L ++  A    L SR   A   L++ ++ D   +       DV 
Sbjct: 50  LWSDKGKVRAEPAQALLMLLDSADQDGLRSRDYDARGLLRAIKEADASGDPKALARVDVA 109

Query: 108 ATDTLLQYLSYAEQAPKVGIAWFFEGQLDQPLAPPSEEAQLALHMAIGNQSLARLMDEYT 167
            +  L  Y++   +  K     +    LD  + P + +A   L  A    SLA  +++  
Sbjct: 110 LSKALAAYVADVRRPSKAVKMRY----LDPEVEPQAPDAAEVLRAAAVAPSLASYVEKAG 165

Query: 168 PQDPAYQQLLQAYQSLSSIEFNEVALYEQMERLKRPGDPLSHREALVQRLALVNLDTTSI 227
              P Y +L  A  +  +      A+    +   RPG        L  RL L        
Sbjct: 166 WMSPLYMKLRAASGAYETRWGGLPAVNVPTDVKLRPGGSSGEIAILRHRLGLP------- 218

Query: 228 LNDVAYYDASLEKPIKQFQKMHGLQTDGVIGPQTMKWLNTSVTERLALLALNAERIRLWP 287
             D   YD +L   +K FQ  HGL  DG+ G QT++ LN        +L LN ER RL P
Sbjct: 219 --DGVDYDKALAAKVKLFQADHGLDADGIAGAQTIEALNRGPGYFARILQLNLERARLLP 276

Query: 288 TQQDSMIVVNVPGFDMKYWDAGREVFESKVVVGKTTRPTPVMNTKLDSLIINPTWNVPHK 347
                 + V+     + Y+  G      KVV G     TP+M   +    +NP WNVP  
Sbjct: 277 GPWVRHVEVDAASARLYYYSGGELDGSMKVVAGAKESQTPMMAGMIRYATLNPYWNVPPD 336

Query: 348 IMVEDILPMVKRDSEYLANHHMEIIRGWS-DPEVIDPALIDWEAVEPETFPYRLRQQAGV 406
           ++   I P +  D   L     E +  W+ D + ++ + IDW+AV       R+RQ  G 
Sbjct: 337 LVERKIAPKIL-DGATLRKMRYEALSDWTADAQTLNQSEIDWQAVAAGQRELRVRQLPGG 395

Query: 407 QNALGTYKFNTPNSRAIYLHDTPSKHLFNNASRAFSSGCIRVENAEKFAQTLLANQGITL 466
            NA+G  KF  PN   IYLHDTP + LF    R FS+GC+R+E+A++  +          
Sbjct: 396 NNAMGKIKFMFPNDLGIYLHDTPDRALFAKPVRHFSNGCVRLEDAQRLGRWFFGKTPTAE 455

Query: 467 DDFPVSTQAIALKKRIPVHIIYQTVWYEEGVLHYRDDIYHYD 508
            D P   Q + L + +PV++ Y TV      + +  D Y  D
Sbjct: 456 SDAP--EQYVPLPRPVPVYLTYLTVVPTADGVQFLPDDYGRD 495